hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /usr1/pfam-23.0/Pfam_fs
Sequence file:            91215132.fa
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Query sequence: gi|91215132|ref|ZP_01252104.1|
Accession:      [none]
Description:    hypothetical protein P700755_12582 [Psychroflexus torquis ATCC 700755]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
LRR_1           Leucine Rich Repeat                       6.6       0.82   1
IMP_cyclohyd    IMP cyclohydrolase-like protein           1.7        1.2   1
s48_45          Sexual stage antigen s48/45 domain        2.3        1.6   1
Herpes_UL74     Herpes UL74 glycoproteins                -0.6        3.9   1
SH3_3           Bacterial SH3 domain                      2.1         10   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
LRR_1             1/1     144   168 ..     1    25 []     6.6     0.82
s48_45            1/1     149   155 ..     1     7 [.     2.3      1.6
IMP_cyclohyd      1/1     175   197 ..   209   236 .]     1.7      1.2
SH3_3             1/1     225   237 ..    42    55 .]     2.1       10
Herpes_UL74       1/1     259   267 ..   454   462 .]    -0.6      3.9

Alignments of top-scoring domains:
LRR_1: domain 1 of 1, from 144 to 168: score 6.6, E = 0.82
                CS    T-EEEETTSSS.BCHSCH    HHHHH HH
                   *->nLeeLdLsgCNPpsltgs....lpssl.nl<-*
                      nLe L+++gC   ++  +++++l++ l  l
  gi|9121513   144    NLEFLNIYGC---NFA-KgekgLEA-LaYL    168

s48_45: domain 1 of 1, from 149 to 155: score 2.3, E = 1.6
                   *->kIkGCDF<-*
                      +I+GC+F
  gi|9121513   149    NIYGCNF    155

IMP_cyclohyd: domain 1 of 1, from 175 to 197: score 1.7, E = 1.2
                CS    EEEEEESS.........S-EEEE.EE--
                   *->aAvaeldgsGKDSLKiidgfdladtekf<-*
                      +++a+  + GKD     + ++l+++++f
  gi|9121513   175    SVAASTNVTGKD-----GDWNLEVGNQF    197

SH3_3: domain 1 of 1, from 225 to 237: score 2.1, E = 10
                   *->nGktGYVlssdYvs<-*
                      +G+ G+V + + ++
  gi|9121513   225    SGGSGWV-NNWTLT    237

Herpes_UL74: domain 1 of 1, from 259 to 267: score -0.6, E = 3.9
                   *->rRavnLstL<-*
                      rR vnLst+
  gi|9121513   259    RRPVNLSTV    267

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