hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /usr1/pfam-23.0/Pfam_fs
Sequence file: 9367819.fa
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Query sequence: gi|9367819|emb|CAB97524.1|
Accession: [none]
Description: DKFZp586J1624.1 hypothetical protein alternatively spliced product, similar to (AF266508) NELF protein [Mus musculus] [Homo sap
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
IQ IQ calmodulin-binding motif 7.8 0.4 1
NUP Purine nucleoside permease (NUP) 1.5 2 1
TP1 Nuclear transition protein 1 3.4 2 1
Orthopox_B11R Orthopoxvirus B11R protein 3.4 2.9 1
AMP_N Aminopeptidase P, N-terminal domain 1.9 4.4 1
TIR TIR domain 0.9 5.4 1
IMPDH IMP dehydrogenase / GMP reductase dom 0.6 6 1
Orthopox_N1 Orthopoxvirus N1 protein 0.7 6.4 1
IFRD Interferon-related developmental regu -0.2 6.5 1
c-SKI_SMAD_bind c-SKI Smad4 binding domain 1.4 6.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TP1 1/1 6 26 .. 38 54 .] 3.4 2
IQ 1/1 12 26 .. 1 15 [. 7.8 0.4
AMP_N 1/1 34 45 .. 1 12 [. 1.9 4.4
NUP 1/1 104 112 .. 1 9 [. 1.5 2
Orthopox_B11R 1/1 138 153 .. 1 16 [. 3.4 2.9
c-SKI_SMAD_bind 1/1 140 156 .. 82 98 .] 1.4 6.8
IFRD 1/1 141 152 .. 354 365 .] -0.2 6.5
TIR 1/1 192 207 .. 131 150 .] 0.9 5.4
Orthopox_N1 1/1 261 274 .. 100 113 .] 0.7 6.4
IMPDH 1/1 282 290 .] 1 9 [. 0.6 6
Alignments of top-scoring domains:
TP1: domain 1 of 1, from 6 to 26: score 3.4, E = 2
*->KsRKRgDDAn....RnyRsHL<-*
K RKR D + +Rn+R HL
gi|9367819 6 KRRKRENDSAsviqRNFRKHL 26
IQ: domain 1 of 1, from 12 to 26: score 7.8, E = 0.4
CS HHHCHHHHHHHHHHH
*->rraaikIQaawRGyl<-*
++a +IQ+ +R +l
gi|9367819 12 NDSASVIQRNFRKHL 26
AMP_N: domain 1 of 1, from 34 to 45: score 1.9, E = 4.4
*->ipadefaaRRkr<-*
++a+ fa+RR+r
gi|9367819 34 VKAQTFAERRER 45
NUP: domain 1 of 1, from 104 to 112: score 1.5, E = 2
*->iqpKVmvIt<-*
++pKVm+I+
gi|9367819 104 VPPKVMLIS 112
Orthopox_B11R: domain 1 of 1, from 138 to 153: score 3.4, E = 2.9
*->DtdvanvEDimnEiDR<-*
D + a EDi+ Ei+R
gi|9367819 138 DHEHATFEDILEEIER 153
c-SKI_SMAD_bind: domain 1 of 1, from 140 to 156: score 1.4, E = 6.8
CS CHHHHHHHHHHHHCC--
*->eeakLeqvLeevkekFd<-*
e+a+ e +Lee++ k +
gi|9367819 140 EHATFEDILEEIERKLN 156
IFRD: domain 1 of 1, from 141 to 152: score -0.2, E = 6.5
*->RstFRDVlrfvE<-*
++tF D+l+ +E
gi|9367819 141 HATFEDILEEIE 152
TIR: domain 1 of 1, from 192 to 207: score 0.9, E = 5.4
CS SG.....GGCCHHHHHHHHH
*->dktersqsdrikfWkkalya<-*
+k+e d+i+fWk++
gi|9367819 192 EKEE----DMIHFWKRLSRL 207
Orthopox_N1: domain 1 of 1, from 261 to 274: score 0.7, E = 6.4
*->rmiekyfddlmidl<-*
+mie+yfd + l
gi|9367819 261 QMIETYFDFRLYRL 274
IMPDH: domain 1 of 1, from 282 to 290: score 0.6, E = 6
CS EB-GGGGEE
RF xxxxxxxxx
*->egLTFDDVL<-*
+ L+FDDVL
gi|9367819 282 KLLDFDDVL 290
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