O15270  SPTC2_HUMAN

Gene name: SPTLC2   Description: Serine palmitoyltransferase 2

Length: 562    GTS: 1.286e-06   GTS percentile: 0.349     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


PathogenicSAV: 6      BenignSAV: 8      gnomAD_SAV: 212      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MRPEPGGCCCRRTVRANGCVANGEVRNGYVRSSAAAAAAAAAGQIHHVTQNGGLYKRPFNEAFEETPMLVAVLTYVGYGVLTLFGYLRDFLRYWRIEKCH 100
BenignSAV:                             L                 A                                                         
gnomAD_SAV:     # D  S    P        V W L  E    RVV  S  VV *      HRR  E L D G   A #P    M*    L   Y   Q           #
Conservation:  2222222222110000010012222212000122222200002222222221240111104154547525164844564554587756766812344342
STMI:                                                                            MMMMMMMMMMMMMMMMMMMMM             
SS_PSIPRED:                      EEE           HHHHHHHHH     EE                  HHHHHHHHHHHHHHHHHHHHHHHHHHH       
SS_SPIDER3:                      EE   EEE        HHHHHHH     EE                   HHHHHHHHHHHHHHHHHHHHHHHHH        
SS_PSSPRED:                                    HHHHHHHHHH   EEE            HHH    HHHHHHHHHHHHHHHHHHHHHHHHHHHH     
DO_DISOPRED3:  BBBBDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                            
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD D                                        
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            HATEREEQKDFVSLYQDFENFYTRNLYMRIRDNWNRPICSVPGARVDIMERQSHDYNWSFKYTGNIIKGVINMGSYNYLGFARNTGSCQEAAAKVLEEYG 200
PathogenicSAV:                                                                                  PW                 
BenignSAV:                                        Q                                A                               
gnomAD_SAV:    R   T K              N   V TKV   G W  R L  TS   I    Y CK   R    VVEA V L  C      W    RK VVT    V  
Conservation:  0616723642866676486597468484868835556545184314553652727588661368343256694798889955231204112411130169
SS_PSIPRED:         HH    HHHHH HHHHHHH HH HHHHH           EEEEEE        EEEE      EEEE             HHHHHHHHHHHHHH 
SS_SPIDER3:     HH       HHHHHH HHHHHHHHHHHHHHH     EE     EEEEEEEEE     EEEE    EEEEEE              HHHHHHHHHHHHH 
SS_PSSPRED:    H HHHHH    HHHH  HHHHHHHHHHHHHHHH           EEEEEE        EEE         EEE            HHHHHHHHHHHHHH 
DO_DISOPRED3:                                                                                                      
DO_SPOTD:      DDDDDDD                                                                                             
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            AGVCSTRQEIGNLDKHEELEELVARFLGVEAAMAYGMGFATNSMNIPALVGKGCLILSDELNHASLVLGARLSGATIRIFKHNNMQSLEKLLKDAIVYGQ 300
BenignSAV:                                                          S                                              
gnomAD_SAV:     AA#  Q  V     Q     R  ML A    VV      #  V   V #   S     G  Y  M     R   A  VCR SST   GQ   Y VAC H
Conservation:  2743756394844329246805471864785564588976744453123233568647674964854665655342444668632247723936663176
SS_PSIPRED:          HHH    HHHHHHHHHHHHHH   EEEEE   HHHHHH HHHH     EEEE    HHHHHHHHHH   EEEEE    HHHHHHHHHHHHHH  
SS_SPIDER3:     HE  HHHHH  HHHHHHHHHHHHHH    EEEEE   HHHHHHHHHHHH    EEEE    HHHHHHHHHH   EEEEE    HHHHHHHHHHHHH   
SS_PSSPRED:           HHH   HHHHHHHHHHHHHH   EEEEE   HHHHHHH HHH     EEEEE   HHHHHHHHHHH  EEEE     HHHHHHHHHHHHHH  
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            PRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEAHSIGALGPTGRGVVEYFGLDPEDVDVMMGTFTKSFGASGGYIGGKKELIDYLRT 400
PathogenicSAV:                                                           M                      V F                
BenignSAV:                                                                                               R         
gnomAD_SAV:     Q Q         M     L     HR   TS   #    V#      VRT   IAW A    D Y K AN I RML         CT  RQ V    * 
Conservation:  7534827575574357456887644286455388457555665887999954921647824473446077864999869695649996584634546660
SS_PSIPRED:            EEEEEEE           HHHHHHHHHHH  EEEEE              HHHH    HHH  EEEE           EEE  HHHHHHHHH
SS_SPIDER3:           EEEEEEEE        E   HHHHHHHHHH  EEEEE   E          EHHH    HHH EEEEE   H  H     H   HHHHHHHHH
SS_PSSPRED:            EEEEEEE E          HHHHHHHHHH HEEEEE             EEEEE       EEEE     HH H         HHHHHHHHH
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            HSHSAVYATSLSPPVVEQIITSMKCIMGQDGTSLGKECVQQLAENTRYFRRRLKEMGFIIYGNEDSPVVPLMLYMPAKIGAFGREMLKRNIGVVVVGFPA 500
BenignSAV:                    A                                                                                    
gnomAD_SAV:     PY  AH M   S  A P VA V       DA   E R             H      M S          L CV     T *Q    # VS F      
Conservation:  3876437546445553364435443379075321800553572364178914713485859932286668465546355448481752535565467799
SS_PSIPRED:    H  HHH      HHHHHHHHHHHHHHH        HHHHHHHHHHHHHHHHHHHH   EEE      EEEEEE  HHHHHHHHHHHHH   EEEEEE   
SS_SPIDER3:    H   H       HHHHHHHHHHHHHHHH       HHHHHHHHHHHHHHHHHHHH   EE       EEEEEE  HHHHHHHHHHHHH   EEEEEE   
SS_PSSPRED:    H    E      HHHHHHHHHHHHHHH        HHHHHHHHHHHHHHHHHHHHH  EE        EEEEE  HHHHHHHHHHHHHH  EEEEEE   
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60  
AA:            TPIIESRARFCLSAAHTKEILDTALKEIDEVGDLLQLKYSRHRLVPLLDRPFDETTYEETED 562
PathogenicSAV:    F                                                          
BenignSAV:                                                           M       
gnomAD_SAV:    P VT                I        D RN       CYQ LLP NG # KM    #  
Conservation:  95644566855463253312542471144547416135443200111122223100141010
SS_PSIPRED:      HHHHHHHEE      HHHHHHHHHHHHHHHHHH                           
SS_SPIDER3:          HEEEEE     HHHHHHHHHHHHHHHHH   EE                       
SS_PSSPRED:       HHHHHHHHHHHH  HHHHHHHHHHHHHHHHHH                           
DO_DISOPRED3:                                           DDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:                                              DDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:                                                          D DDDDD