O43405  COCH_HUMAN

Gene name: COCH   Description: Cochlin

Length: 550    GTS: 1.975e-06   GTS percentile: 0.644     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


PathogenicSAV: 19      BenignSAV: 12      gnomAD_SAV: 267      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MSAAWIPALGLGVCLLLLPGPAGSEGAAPIAITCFTRGLDIRKEKADVLCPGGCPLEEFSVYGNIVYASVSSICGAAVHRGVISNSGGPVRVYSLPGREN 100
PathogenicSAV:                                      D            S              G                    #E            
BenignSAV:            TV                                              P                                            
gnomAD_SAV:     TP   RTVSFD   P  #E    Q  T     #  GSFN#S      F SEDY#   L A A RA V AL   E       VGKA VL Q  R ##*  
Conservation:  7333333333333300333011011222213538166637511201154994382002236584247854887868637384420298261422439414
STMI:          SSSSSSSSSSSSSSSSSSSSSSSS                                                                            
SS_PSIPRED:      HHHHHHHHHHHHHHH             EEEEEE        EEEEE             HHHEEE   EEEEEEEEE         EEEEE      
SS_SPIDER3:      HHHHHHHHHHHHHH              EEEEEEE      EEEEEEE        EEEEEEEEEE   EE EEEEEEEEE      EEEEE     E
SS_PSSPRED:      HHHHHHHHHHHHHHH             EEEEEE        EEEEE         EEE  EEEEEEEE EEEEE  EEEE      EEEE       
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDD                                                                          
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDD                                                                           
DO_IUPRED2A:                                                                                                       
DISULFID:                                       C               C   C                   C                          
CARBOHYD:                                                                                                         N

                       10        20        30        40        50        60        70        80        90     
AA:            YSSVDANGIQSQMLSRWSASFTVTKGKSSTQEATGQAVSTAHPPTGKRLKKTPEKKTGNKDCKADIAFLIDGSFNIGQRRFNLQKNFVGKVALMLGIGTE 200
PathogenicSAV:         #       R T                                          Y                                      
BenignSAV:                                       R                                                                 
gnomAD_SAV:    SF    S TRYRV           RD T A    R      YL    P T   *   D       V   M  N  T  H*  I     E MVQI  TR  
Conservation:  9253155764851833724993532100025532312145314114722862227214755943754455968267959984899775365424766922
SS_PSIPRED:    EEEE               EEEE       EEE  EEEEE                       EEEEEEEE      HHHHHHHHHHHHHHHHHH     
SS_SPIDER3:    EEEE    HHHHH HHH   EEE        E                               EEEEEEEE        HHHHHHHHHHHHHHH      
SS_PSSPRED:             HHHH                                                   EEEEEEE      HHHHHHHHHHHHHHHHHH     
DO_DISOPRED3:                               DDD         DD                                                         
DO_SPOTD:                                 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                         
DO_IUPRED2A:                                D DDDDDDDDDDDDDDDDDDDDDDDDDD                                           

                       10        20        30        40        50        60        70        80        90     
AA:            GPHVGLVQASEHPKIEFYLKNFTSAKDVLFAIKEVGFRGGNSNTGKALKHTAQKFFTVDAGVRKGIPKVVVVFIDGWPSDDIEEAGIVAREFGVNVFIVS 300
BenignSAV:                                                                                     N                   
gnomAD_SAV:      RM   PVN*Y         LI#  N   VV K#  GE D  I  #  RI  Q SMG   I  AL  L MI   V    N      A  G D     A#
Conservation:  8944947948619558629467825865258575436299469497953464537931319394839773465699996955539622985496969484
SS_PSIPRED:      EEEEEEE   EEEEEE      HHHHHHHHHH        HHHHHHHHHHHH   HHH       EEEEEEE       HHHHHHHHHH   EEEEEE
SS_SPIDER3:      EEEEEEE    EEEEE      HHHHHHHHH         HHHHHHHHHHHHH E          EEEEEEE       HHHHHHHHHH   EEEEE 
SS_PSSPRED:      EEEEEEE     EEEE      HHHHHHHHHH        HHHHHHHHHHHHH            EEEEEEE       HHHHHHHHHHH  EEEEEE
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       
CARBOHYD:                          N                                                                               

                       10        20        30        40        50        60        70        80        90     
AA:            VAKPIPEELGMVQDVTFVDKAVCRNNGFFSYHMPNWFGTTKYVKPLVQKLCTHEQMMCSKTCYNSVNIAFLIDGSSSVGDSNFRLMLEFVSNIAKTFEIS 400
PathogenicSAV:                                                                        T           C  F             
BenignSAV:                                                        S                                                
gnomAD_SAV:      NL        *         SW  S    RKTS LRAI CI    EN  S       MI CT   NP        # E   C VH       R  V L
Conservation:  8557337923482713633856954554944166599653864658377695252739678979977559869999979419845593732275228775
SS_PSIPRED:         HHHHHHHH        EE     EEEE       HH  HHHHHHH   HHH          EEEEEEE      HHHHHHHHHHHHHHHHH    
SS_SPIDER3:    E    HHHHHHHH    H HEEE     EEEE   HHHHHH  HHHHHH                 EEEEEEE      HHHHHHHHHHHHHHHHH  E 
SS_PSSPRED:         HHHHH H       EEEE    EEEEE           HHHHHHH                EEEEEEE       HHHHHHHHHHHHHHHHH   
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            DIGAKIAAVQFTYDQRTEFSFTDYSTKENVLAVIRNIRYMSGGTATGDAISFTVRNVFGPIRESPNKNFLVIVTDGQSYDDVQGPAAAAHDAGITIFSVG 500
BenignSAV:      V                     D             H                                        F                     
gnomAD_SAV:    #V V T       H HM     EDT RD#       SH#V DRA     V  AFT   DS   R    V         F V #D  G    TA # L  D
Conservation:  6386566579988486295361450285244265328397688879959736322368142213263568566999999966229823842455554658
SS_PSIPRED:       EEEEEEEE   EEEEEE      HHHHHHHHHH        HHHHHHHHHHHH           EEEEEEE        HHHHHHHHH   EEEEEE
SS_SPIDER3:      EEEEEEEEE   EEEEEE      HHHHHHHHH          HHHHHHHHHHHH          EEEEEEE        HHHHHHHHH   EEEEE 
SS_PSSPRED:       EEEEEEEE    EE         HHHHHHHHHH         HHHHHHHHHHHH          EEEEEEE       HHHHHHHHHHH  EEEEEE
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50
AA:            VAWAPLDDLKDMASKPKESHAFFTREFTGLEPIVSDVIRGICRDFLESQQ 550
PathogenicSAV:            T              C              #        
BenignSAV:                      G             S                  
gnomAD_SAV:    A   TPE    T   QEGP   L#G  #RFQTV  #  G#VRKYY   HK
Conservation:  56886246944677485629368565836812422254659946723226
SS_PSIPRED:         HHHHHHH     HH EEE    HHHHHHHHHHHHHHHHHHHHH  
SS_SPIDER3:         HHHHHHH     H HEEEE  HHHHHHHHHHHHHHH         
SS_PSSPRED:    E    HHHHHHH     HHHEEEHHHH  HHHHHHHHHHHHHHHHHHHH 
DO_DISOPRED3:                                                  DD
DO_SPOTD:                                                   DDDDD
DO_IUPRED2A: