P02458  CO2A1_HUMAN

Gene name: COL2A1   Description: Collagen alpha-1(II) chain

Length: 1487    GTS: 1.231e-06   GTS percentile: 0.324     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


PathogenicSAV: 146      BenignSAV: 18      gnomAD_SAV: 610      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MIRLGAPQTLVLLTLLVAAVLRCQGQDVQEAGSCVQDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPICPTDLATASGQP 100
PathogenicSAV:                                               R         Y                                           
BenignSAV:          D  S                                                                                           
gnomAD_SAV:      G AD  S            P      P  S     R  S   Y   L S Q     AR     N  R  M GS   D S R    F LA  V     L
Conservation:  5222202222233211220222211101000035113510304355556226255343160235624172210362241230445553731111110222
STMI:          SSSSSSSSSSSSSSSSSSSSSSSSS                                                                           
SS_PSIPRED:         HHHHHHHHHHHHHHHHHHH         EEE  EEE            EEE         EEEE                               
SS_SPIDER3:       E  HHHHHHHHHHHHHHHHH       E EEEE  EEEE           EEEE    EEE EEEEE                              
SS_PSSPRED:      EE  HHHHHHHHHHHHHHHHH                             EEEEE    EEE EEE                                
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DDDDDDDD
DO_SPOTD:            DDDDDD                                                             DDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:                                     D                                                            DDDDD
PROPEP:                                 QDVQEAGSCVQDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPICPTDLATASGQP

                       10        20        30        40        50        60        70        80        90     
AA:            GPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQ 200
PathogenicSAV:                                                                                 P                   
BenignSAV:                                              D               L                                          
gnomAD_SAV:    V  R    S YV # AALR    L     QP H  HC    D   S  CSGV GT #    A R   DTSC R  SE S   IT        DTL     
Conservation:  2222121202110002222222222222222312521822732811723626825615702542533723222433423446322333253323321323
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DDDDD            D  D  D DDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
PROPEP:        GPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAA                   
SITE:                                                                                          AQ                  
CARBOHYD:                                                                                               K          

                       10        20        30        40        50        60        70        80        90     
AA:            GPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG 300
PathogenicSAV:       R        D  R                    D                          D  R    C      D                  
BenignSAV:                                                 L                                                       
gnomAD_SAV:    E T  T        E     P       G     I  AV  #    SR M   Y     S R     L  L  TH     #          NR R     
Conservation:  7726336489347338239569238349848769338548437316336526458538748437667337566376386455465354366446355257
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DD               DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDBBBDDDDD  DDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
CARBOHYD:                                                                                            K           K 

                       10        20        30        40        50        60        70        80        90     
AA:            EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGS 400
PathogenicSAV:  VD              R                          D        V              R  #  R T               S  D    
gnomAD_SAV:    A  V     #   S K   L SVA    # G  QI SP TV  QS N E  LT  L  IS VD    L    S   S  AATH    TL  H  T I  Y
Conservation:  5382383484372253452362342453464355353352354765673264456263353473356573453573274262582463262555373263
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDD DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
CARBOHYD:             K                                                                 K                          

                       10        20        30        40        50        60        70        80        90     
AA:            PGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGV 500
PathogenicSAV:                       D                    S  #     #  V                                   V        
gnomAD_SAV:    S       K#  N           L V      S  Q #      # S  RT  M  S  P     R LR       S  S  #S KD     H Q   F
Conservation:  4633442624635623627632322433745733626645642632832545732862822716852838751732924733752866845738985732
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDD DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            GPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG 600
PathogenicSAV: R  #  E  #  S  #  D                          #V                 C    R  #                 R        V
BenignSAV:                                                      L                                                  
gnomAD_SAV:     L  S  G      H     N    RE D  D*          TS    H   #     W    H            A S     C  AL        S 
Conservation:  8329339688356276486366226337235458227226356338436337548357487457456448357625536239388547567418378347
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGE 700
PathogenicSAV:      R              R           S     D  #  A           S  E      F S  A  D                         
BenignSAV:                                          I                                                              
gnomAD_SAV:          S ADS K   VAKR         C    HS I    T   T T     K   S      EI   L L        E C T G      A     
Conservation:  4466676663374495364682252283254585885274244153283386555273243354665674293376465265352355153262254674
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
CARBOHYD:             K           K                                                                                

                       10        20        30        40        50        60        70        80        90     
AA:            RGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGAN 800
PathogenicSAV:              #  # CD           D                                      #  S     R              R     
gnomAD_SAV:         AC F#     R  H  S         S T Q A##  K  S       K  V   T      S G       V   #  P    L     S    
Conservation:  4636744832721751727834844836544742832821822632744747866933732825644851715635623767714533843634542732
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            GEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG 900
PathogenicSAV:          C                    #     R        R        S     D     V  V  #                 R  E  V   
gnomAD_SAV:     K  DF     V     # TL D     #   V    H  V           DD    N  DL    S  TL S   A       T      L       
Conservation:  7366525417226226366237577528447456676355247438247406226157427336337426257626425325335356225425234547
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGP 1000
PathogenicSAV:    C    C        R           #           D  S  D                    S           S       C  G        
BenignSAV:                                                        T                                                
gnomAD_SAV:     # HI          #L LS S   G #   Q   S S Q   HS H SS T              TG L   R  T     I     H  K     L L
Conservation:  3355464663272253463173286583571685182295384283273382283372272472183273475274382484583482773683482362
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDD     DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            SGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPS 1100
PathogenicSAV:        V        V        A                   SS  D  R           V  E     S  V           R  D        
BenignSAV:                                                       T                                                 
gnomAD_SAV:    L K   R      AHK L   L T   M       G  RS   A## SN T  I   S K  VM    #H #  YL ST L  N  H     T  #    
Conservation:  3874753832722536534562656843853742764633725735664732615545533522632844644653632653772536552642521542
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            GPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG 1200
PathogenicSAV: R  E     C        R        R              S        R     #           S  R  #           #        S  D
gnomAD_SAV:    * G T#       SK  R #     KK     H LI     H  S A  VR T         # L   I S            T    #H QL KI    
Conservation:  7339387227629369868438617569358566547339346438329527348336447458448429227488138136337446466435323426
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
CARBOHYD:                                   K                                                                      

                       10        20        30        40        50        60        70        80        90     
AA:            PPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDAEVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWI 1300
PathogenicSAV:         V         H                                                                                 
gnomAD_SAV:     T S  S     S AH VN# T    SRT# S NTP SVQV    S    QETK  G   F KKH  RTH SKR H    H  KE     S    RN  V
Conservation:  3452474675464452533322221231134434334226343232123225135323534521223132262343225222322312013021252757
SS_PSIPRED:                                       HHH                      HHHHHHH           HHH                   
SS_SPIDER3:                                        HH H H                  HHHHH              HHH   HHH            
SS_PSSPRED:                                                          HHH HHHHHH              HHH                   
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DDDDDDDDDDDDDDDDDD                          
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                         
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                 
REGION:                      GPGIDMSAFAGLGPREKGPDPLQYMRA                                                           
SITE:                                                  AD                                                          
DISULFID:                                                                                        C     C           

                       10        20        30        40        50        60        70        80        90     
AA:            DPNQGCTLDAMKVFCNMETGETCVYPNPANVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNITYHCKNSIAYL 1400
PathogenicSAV:                        G                                                          M      NC         
BenignSAV:                         K         I                                                                     
gnomAD_SAV:        A N  T#N    VK  K  ICHS#V I   S    #    T        SD  R  C GN# PS I SI  NL H   MKA         S     
Conservation:  7764863286557485656657841511214426395243322247677653524834716611220323436954969877445296498886886665
SS_PSIPRED:           HH                                       EE      EEEEEE        EEE              EEEEEEE HHHH 
SS_SPIDER3:              EEEE       E E           H              E      EEEEE       HHHEE  E E         EEEEE  HHHHH
SS_PSSPRED:                                                               EE       HHHHHHHH                 HHHHHHH
DO_DISOPRED3:       DDDD   D                                                                                       
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                     DDD                                                               
METAL:         D NQ C  D                                                                                           
DISULFID:           C        C       C                                                                     C       
CARBOHYD:                                                                                             N            

                       10        20        30        40        50        60        70        80       
AA:            DEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL 1487
PathogenicSAV:                                       M        P                    H               G  
BenignSAV:         S                                     S               C                            
gnomAD_SAV:     K  S        R FS MA QT   #  M        MN IS   R  #GCW     #   T   S  VRR Q   SAN  L    
Conservation:  811383657543659446454846658965526217673263515446443855165777753836837593327668224556773
SS_PSIPRED:     HH              HHH        EEEEEEE         EEEEEEEEE        EEEEEE         EEEEE      
SS_SPIDER3:    H H     HHHH     HHH        EEEEEE    E    EEEEEEEEEE        EEEEEE        EEEEEE      
SS_PSSPRED:    HH    HHHHHHH               EEEEEE            EEEEEEE         EEEE        EEEEEEE      
DO_DISOPRED3:       DDDDDDDDDDDDDDDDDDDDDDD     DDDDDDDDDDDDD DD   DDDDDDDDDDDDDDDDD                  
DO_SPOTD:                                                                                             
DO_IUPRED2A:                                                                                          
DISULFID:                                           C                                              C