P12109  CO6A1_HUMAN

Gene name: COL6A1   Description: Collagen alpha-1(VI) chain

Length: 1028    GTS: 2.156e-06   GTS percentile: 0.708     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


PathogenicSAV: 44      BenignSAV: 25      gnomAD_SAV: 656      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MRAARALLPLLLQACWTAAQDEPETPRAVAFQDCPVDLFFVLDTSESVALRLKPYGALVDKVKSFTKRFIDNLRDRYYRCDRNLVWNAGALHYSDEVEII 100
PathogenicSAV:                                           A                                                         
gnomAD_SAV:     K      L      R     KL NLWT  L  F L PL #       S      RD A E    AQC      N   S  *     T T L  EK    
Conservation:  0000001200100000001000000000000014452454448666555640061314411330630053026110021114031611546466312113
STMI:          SSSSSSSSSSSSSSSSSSS                                                                                 
SS_PSIPRED:     HHHHHHHHHHHHHHHHHHH                EEEEEEE  HHHHH       HHHHHHHHHHHHHHHHHHH       EEEEEEEEEE   EEEE
SS_SPIDER3:     HHHHHHHHHHHHHHHHHH                EEEEEEEE  H H HH      HHHHHHHHHHHHHHHHHH        EEEEEEEEEE   EEEE
SS_PSSPRED:    HHHHHHHHHHHHHHHHHHH                EEEEEEEE             HHHHHHHHHHHHHHHHHHHH        EEEEEEEE    EEEE
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDD D                                                                        
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDD                                                                         
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            QGLTRMPGGRDALKSSVDAVKYFGKGTYTDCAIKKGLEQLLVGGSHLKENKYLIVVTDGHPLEGYKEPCGGLEDAVNEAKHLGVKVFSVAITPDHLEPRL 200
PathogenicSAV:                     R                                                                               
gnomAD_SAV:    R FMCV# SHNS EINMNV      V  AN    Q V  F LRSF      HV  LS  QS     D  R   YV  K RQ SIRL           LHM
Conservation:  2130000121104212301414354654676541132023000011100015255556653100033452542024227521243364442300003033
SS_PSIPRED:    E        HHHHHHHHH         HHHHHHHHHHHHHHH        EEEEEEE              HHHHHHHHHH   EEEEEE      HHHH
SS_SPIDER3:    E        HHHHHHHHH          HHHHHHHHHHHHHH       EEEEEEEE              HHHHHHHHHH   EEEEEE      HHHH
SS_PSSPRED:    E        HHHHHHHHHHHEE      HHHHHHHHHHHHHH        EEEEEEE            HHHHHHHHHHHHH  EEEEEE       HHH
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            SIIATDHTYRRNFTAADWGQSRDAEEAISQTIDTIVDMIKNNVEQVCCSFECQPARGPPGLRGDPGFEGERGKPGLPGEKGEAGDPGRPGDLGPVGYQGM 300
PathogenicSAV:                                                               #     #  # L#  E  #  R  #  #  #  V  # 
gnomAD_SAV:        M QMC#G  MVVVG   #NT  V     N  MH  NDDM *A   LK  SP *LL  W YL  G  *  L  A K     #S  S N  ADRDR  
Conservation:  1124300033133031000000001010013312321122013201614220000141161061140161161180160370070051174263251171
SS_PSIPRED:    HHHH                   HHHHHHHHHHHHHHHHHH                                                           
SS_SPIDER3:    HHHH                 H HHHHHHHHHHHHHHHH       EE                                                    
SS_PSSPRED:    HHH                   HHHHHHHHHHHHHHHHHHH                                                           
DO_DISOPRED3:                                                 DDDD DDDDDDDD DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:             DDDDD       DDDDDDDDDDDD            DD         DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:    D           DDDD  DDDDDDDDDDDDD  D                  DDD DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
MOTIF:                                                                      RGD                                    
CARBOHYD:                 N                                                                                        

                       10        20        30        40        50        60        70        80        90     
AA:            KGEKGSRGEKGSRGPKGYKGEKGKRGIDGVDGVKGEMGYPGLPGCKGSPGFDGIQGPPGPKGDPGAFGLKGEKGEPGADGEAGRPGSSGPSGDEGQPGEP 400
PathogenicSAV:  #  #     D  E    N                     #                                    P                      
BenignSAV:                                 R  SM                                                              E    
gnomAD_SAV:       #RRH    #      E     G VNR  S#   I H  M  RRSL E H  R TS    E ST     K# DA T E V  S N#     K  L  S
Conservation:  4711801825612611803811701704924714620511522663531612601821812821811900705710601711722710910811310800
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDD    B D  BBB    DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            GPPGEKGEAGDEGNPGPDGAPGERGGPGERGPRGTPGTRGPRGDPGEAGPQGDQGREGPVGVPGDPGEAGPIGPKGYRGDEGPPGSEGARGAPGPAGPPG 500
PathogenicSAV:                                                                                               S     
BenignSAV:                                     Q     Q                G                                   V        
gnomAD_SAV:     L R    V ND  L   STAR Q     G  W I  MQ    H S   RR    G  SA DH  L KT  # #   G#NV TLE K  S V    RS  
Conservation:  7028007028018019018115105117207015115014026112407315025115106015127106116226127107117016217028115126
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
MOTIF:                                                  RGD                                 RGD                    

                       10        20        30        40        50        60        70        80        90     
AA:            DPGLMGERGEDGPAGNGTEGFPGFPGYPGNRGAPGINGTKGYPGLKGDEGEAGDPGDDNNDIAPRGVKGAKGYRGPEGPQGPPGHQGPPGPDECEILDII 600
PathogenicSAV:                          V                                            T                             
gnomAD_SAV:     R         SST S NKA   L E L S  TL# D M    S   NK        #H NVT Q    TT CQD#KRL ALSA   L RLN# K W   
Conservation:  3170171363080272311621512412412411501503602503710621523501010230160160100050100030241050131334433334
SS_PSIPRED:                                                                                                    HHHH
SS_SPIDER3:                                                                                                   HHHHH
SS_PSSPRED:                                                                                                   HHHHH
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD       
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD       
CARBOHYD:                     N                    N                                                               

                       10        20        30        40        50        60        70        80        90     
AA:            MKMCSCCECKCGPIDLLFVLDSSESIGLQNFEIAKDFVVKVIDRLSRDELVKFEPGQSYAGVVQYSHSQMQEHVSLRSPSIRNVQELKEAIKSLQWMAGG 700
BenignSAV:                                                                             Q       T                   
gnomAD_SAV:    V    F  RTRSTV#  LL      T     KT  # II    W  W Q # LK     VDA   R  HT#K#G  L S VGHL AVQQ M R   I  S
Conservation:  2344444462724444276686889680289146928752444542212121020123133454566123351513221130322154134425275544
SS_PSIPRED:    H              EEEEE       HHHHHHHHHHHHHHHHH  HHHH        EEEEEEE    EEEEEE        HHHHHHHHHH   HH  
SS_SPIDER3:     H       E      EEEE       HHHHHHHHHHHHHHHH   H H         EEEEEEE    EEEEEEE       HHHHHHHHH        
SS_PSSPRED:    HH                           HHHHHHHHHHHHHHHHHHH          EEEEEEE     EEEE         HHHHHHHHHHHHHHH  
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDD D  D                                                                       
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                              D                        

                       10        20        30        40        50        60        70        80        90     
AA:            TFTGEALQYTRDQLLPPSPNNRIALVITDGRSDTQRDTTPLNVLCSPGIQVVSVGIKDVFDFIPGSDQLNVISCQGLAPSQGRPGLSLVKENYAELLEDA 800
BenignSAV:                                                                                       Q                 
gnomAD_SAV:      M  S   M    PL#IR  H        H  A G   L DM   ASV    MSV  M  S     H  G      VLP  WSR L A  S   M K  
Conservation:  7475485243222221001112255758787243053001612570010171447529351002103150153700000000102010021142152341
SS_PSIPRED:      HHHHHHHHHHHH       EEEEEEE           HHHHHH    EEEEEEE         HHHH  EE             EEE   HHHHHHHH
SS_SPIDER3:      HHHHHHHHHHH         EEEEEE           HHHHH     EEEEEEE EH H          E            EEEE     HHHHHHH
SS_PSSPRED:      HHHHHHHHHHH        EEEEEE            HHHHHH    EEEEEEEEE       HHHH  EE               EHHHHHHHHHHH
DO_DISOPRED3:                                                                           D                          
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                            DDDDD      DDD                                                             

                       10        20        30        40        50        60        70        80        90     
AA:            FLKNVTAQICIDKKCPDYTCPITFSSPADITILLDGSASVGSHNFDTTKRFAKRLAERFLTAGRTDPAHDVRVAVVQYSGTGQQRPERASLQFLQNYTAL 900
BenignSAV:            H     R            L                      #                             SM        L          
gnomAD_SAV:       S  THT#V RRFLG # #SM  TLTNV     D TGL      IS C T H  KH VKTS MESV NMQLV M* GSMV  H KQVL    K HMV 
Conservation:  4321331044122043100532030112232233453232300230022032102301411311011000233332334211110110003031130104
SS_PSIPRED:    HHHHHHHH                     EEEEE       HHHHHHHHHHHHHHHHHHHH          EEEEEE         EEEE      HHHH
SS_SPIDER3:    HHHH EEEEEE       E         EEEEEE       H HHHHHHHHHHHHHHHHHH          EEEEEE      E  EEEEE     HHHH
SS_PSSPRED:    HHHHHHHHH                    EEEEE         HHHHHHHHHHHHHHHHHH         EEEEEEEE        EEEE      HHHH
DO_DISOPRED3:                                    DDD  DDDDD                                                        
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       
CARBOHYD:         N                                                                                           N    

                       10        20        30        40        50        60        70        80        90     
AA:            ASAVDAMDFINDATDVNDALGYVTRFYREASSGAAKKRLLLFSDGNSQGATPAAIEKAVQEAQRAGIEIFVVVVGRQVNEPHIRVLVTGKTAEYDVAYGE 1000
BenignSAV:                                H                           K                F                           
gnomAD_SAV:     NVINTVG FD T NA NV  CMN#  HKVL STT ET  #    S  DTM#T VKNDM  G QVSVK  LAFMRHR   R VCI  #SQM K NM#CS 
Conservation:  1004112041412413115502321031001210112225345552400020003123202211123221333231212100011300000000221223
SS_PSIPRED:    HHHHHH HH      HHHHHHHHHHHHHHH      EEEEEEE        HHHHHHHHHHHHH   EEEEEEE     HHHHHHHHH    HH      
SS_SPIDER3:    HHHHH          HHHHHHHHHHHHH        EEEEEEE        HHHHHHHHHHHHH   EEEEEEE     HHHHHHHHH   HHH H   H
SS_PSSPRED:    HHHHHH HH      HHHHHHHHHHHHHHH      EEEEEEE        HHHHHHHHHHHHHH  EEEEEEE     HHHHHHHH             
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                       DDDD                                            

                       10        20        
AA:            SHLFRVPSYQALLRGVFHQTVSRKVALG 1028
BenignSAV:         H    R                  
gnomAD_SAV:    NQ  P LT H P HS  RR I  M V  
Conservation:  1143110140151112412231236300
SS_PSIPRED:            HHHHHHHHHHHHH HHH   
SS_SPIDER3:    HHH     HHHHHHHHHHHHHHHHH   
SS_PSSPRED:          HHHHHHHHHHHHHHHHHHHH  
DO_DISOPRED3:                              
DO_SPOTD:                                 D
DO_IUPRED2A: