P12110  CO6A2_HUMAN

Gene name: COL6A2   Description: Collagen alpha-2(VI) chain

Length: 1019    GTS: 2.462e-06   GTS percentile: 0.797     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


PathogenicSAV: 44      BenignSAV: 39      gnomAD_SAV: 820      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MLQGTCSVLLLWGILGAIQAQQQEVISPDTTERNNNCPEKTDCPIHVYFVLDTSESVTMQSPTDILLFHMKQFVPQFISQLQNEFYLDQVALSWRYGGLH 100
gnomAD_SAV:           M        T#  R E DNLLA  D D    D  N SVYMF M   TG I RRF M    LR R L#LH  I MR   C#GRLV   H #S Y
Conservation:  0000000012000010010110000000000000000000014452454448666555641613144113306300530271100211140316115464
STMI:          SSSSSSSSSSSSSSSSSSSS                                                                                
SS_PSIPRED:        HHHHHHHHHHHHHHHHHHHHH                     EEEEEE           HHHHHHHHHHHHHHHHHHHH        EEEEEEEEE
SS_SPIDER3:        HHHHEHHHH H HHHHHHH                     E EEEEEE           HHHHHHHHHHHHHHHHHHHH       EEEEEEEEEE
SS_PSSPRED:        HHHHHHHHHHHHHHHHHHHH                    EEEEEEEE           HHHHHHHHHHHHHHHHHHHHH      EEEEEEE E 
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                                                 
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                                            
DO_IUPRED2A:                            D DDDDDDDDDDD                                                              

                       10        20        30        40        50        60        70        80        90     
AA:            FSDQVEVFSPPGSDRASFIKNLQGISSFRRGTFTDCALANMTEQIRQDRSKGTVHFAVVITDGHVTGSPCGGIKLQAERAREEGIRLFAVAPNQNLKEQG 200
BenignSAV:          K                                                            S                                 
gnomAD_SAV:       RMKA  LLDNNQTFSF #  # RP CCS L N V S VMD NQ  HRNS IR VM  I S   VI  R#  R*TKW CK C W #TMV #    D V
Conservation:  6631211321301211042123014143546546765421321230001000000525555665313345254202422752124336445230000313
SS_PSIPRED:        EEE       HHHHHHHHH          HHHHHHHHHHHHHH      EEEEEEE           HHHHHHHHHHH    EEEE          
SS_SPIDER3:    E   EEE       HHHHHHHHH         HHHHHHHHHHHHHH       EEEEEEEE          HHHHHHHHHHH   EEEEE        HH
SS_PSSPRED:         EE       HHHHHHHHHH        HHHHHHHHHHHHHHH      EEEEEEEE         HHHHHHHHHHHHH   EEEEE         
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                         D
DO_IUPRED2A:                                                                          DDD D                     DDD
CARBOHYD:                                             N                                                            

                       10        20        30        40        50        60        70        80        90     
AA:            LRDIASTPHELYRNDYATMLPDSTEIDQDTINRIIKVMKHEAYGECYKVSCLEIPGPSGPKGYRGQKGAKGNMGEPGEPGQKGRQGDPGIEGPIGFPGPK 300
PathogenicSAV:                                                              D  E  #  #  S     #  #  #  #  #  R  #  
BenignSAV:                               N                                                  K                      
gnomAD_SAV:     WGMTTMLQK  H N T #V N #KTNR I DHT  ITERK CRG* ##N   VT   VSR  H  Q TR  L  L K         L          H 
Conservation:  3112430000034133031000000100133123211320132016000142201411610611401611611802603700700511742632511714
SS_PSIPRED:     HH                     HH HHHHHHHHHHHHHH                                                           
SS_SPIDER3:    H          EE              HHHHHHHHHHHHHH                                                           
SS_PSSPRED:                                 HHHHHHHHHHHHHHHH                                                       
DO_DISOPRED3:                                                           DD       DDDDDDDDDDBBB     BBB    DDDDDDDDD
DO_SPOTD:        DD DDDD        DDDDDDDDDDDDDDD            D   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDD DD   DDDDDDDDD DDD  DD DDD                        DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            GVPGFKGEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIGPPGCKGDPGNRGPDGYPGEAGSPGERGDQGGKGDPGRPGRRGPPGEIGAKGSKGYQGNSG 400
PathogenicSAV: #  V  V          N                                    C                                             
BenignSAV:                                                                      Q          C                     N 
gnomAD_SAV:     I SL     D   #SH   S   AEKV NR  AR  CS LSS       W HNSSR      EDQ    S AG#AC  HT  L   RSR   AH D NR
Conservation:  7118018256126118038117017049247146215115226635316126018218128218119017057116017117227109108113118017
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
MOTIF:                                                                          RGD                                
CARBOHYD:                                N                                                                         

                       10        20        30        40        50        60        70        80        90     
AA:            APGSPGVKGAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGD 500
PathogenicSAV:                                                                                                  H  
BenignSAV:                                                  N                                          Q           
gnomAD_SAV:    #  R  M   E R# TLRL  KR H  E SIE #S  NS      N  SQ  HS           R QSF    S#H VFA SR   FQ GSS   HHEH
Conservation:  0280170280180190181151051172070151150150261124073150251151070151271061162261271071170162170281151263
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
MOTIF:                                  RGD                                                            RGD      RGD

                       10        20        30        40        50        60        70        80        90     
AA:            SGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPGPPGDPGLTECDVMTYVRE 600
PathogenicSAV:                               R                                                                     
BenignSAV:                      S                                   R              Q                               
gnomAD_SAV:    LRK   E #LS # VTSS  Q #     K SLC  K D# N  W   T#K  KR KLV  S#TSD  SQ Q  # RLKRK S AENRVFK   II CMS 
Conservation:  1701713630802724116225124124224016124115015036025037106215235011023016016015013024105013133443333423
SS_PSIPRED:                                                                                                 HHH HH 
SS_SPIDER3:                                                                                                  HHHHH 
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD  
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD       
MOTIF:                                               RGD                                                           

                       10        20        30        40        50        60        70        80        90     
AA:            TCGCCDCEKRCGALDVVFVIDSSESIGYTNFTLEKNFVINVVNRLGAIAKDPKSETGTRVGVVQYSHEGTFEAIQLDDERIDSLSSFKEAVKNLEWIAGG 700
PathogenicSAV:                     N                                            N                                 S
BenignSAV:              H                                      T                              H                    
gnomAD_SAV:    # R #N  #C  T  #  I    K TE NS I  RIL#  MA S D  T VSNYKIEMHM # *   K I QDT#V NKCM#FR# SNKTI K K    S
Conservation:  4445446251734444276686889681289146928752444542212121020123134454566123351513221131322254134425275544
SS_PSIPRED:                    EEE                 HHHHHHHHH HH          EEEEEEE     EEEE         HHHHHHHHH        
SS_SPIDER3:                                      H HHHHHHH              EEEEEEEE    EEEEEE        HHHHHHHHH        
SS_PSSPRED:                                      H HHHHHHHHH             EEEEEE      EEE          HHHHHHHHHHHHHH   
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD D  DDD DD                                                       
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                    D       DDDDD                                      
CARBOHYD:                                   N                                                                      

                       10        20        30        40        50        60        70        80        90     
AA:            TWTPSALKFAYDRLIKESRRQKTRVFAVVITDGRHDPRDDDLNLRALCDRDVTVTAIGIGDMFHEKHESENLYSIACDKPQQVRNMTLFSDLVAEKFIDD 800
PathogenicSAV:                                                                             R                       
BenignSAV:                            C   M     C                 I                         N                      
gnomAD_SAV:    S       # CNL LR NQH * S  #MGF   C N QNN##  QV YN#NII#M VSLR T #KT KR IF   VRE     C#IMP  # IT #L H 
Conservation:  7475486243222221121111532255758787243053101612571015171447529351002103150153701021101211421523415321
SS_PSIPRED:      HHHHHHHHHHHHHHHH      EEEEEEE         HHHHHHHHH   EEEEEEE         HHHHHHHH      EEEE  HHHHHHHHHHHH
SS_SPIDER3:      HHHHHHHHHHH   H      EEEEEEE          HHHHHHH     EEEEEEEEE       HHHHHHHH      EEEE  HHHHHHHHHHHH
SS_PSSPRED:       HHHHHHHHHHHHHHH      EEEEEE          HHHHHHHH   EEEEEEEE        HHHHHHHH      EEEEE  HHHHHHHHHHHH
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                           D                                                           
MODRES_P:      T   S                                                                                               
CARBOHYD:                                                                                          N               

                       10        20        30        40        50        60        70        80        90     
AA:            MEDVLCPDPQIVCPDLPCQTELSVAQCTQRPVDIVFLLDGSERLGEQNFHKARRFVEQVARRLTLARRDDDPLNARVALLQFGGPGEQQVAFPLSHNLTA 900
PathogenicSAV:                                     P                                 N    S                        
BenignSAV:        G                              I       Q         Q             # N                         R     
gnomAD_SAV:    IGNI YSER  M L F#R*  P M HRM Q MNVILP NS KQP K   Y  QC A  MVQQ SP LKYN#S  TCLV M S   SGRL TYL R   MT
Conservation:  3310441220334315320232000030101223224345423230033002203210231141131101100023333233421111011313113110
SS_PSIPRED:    HHHH                             EEEEEE      HHHHHHHHHHHHHHHHHHHH          EEEEEE     EEEEE      HHH
SS_SPIDER3:    HHH                              EEEEEE      HHHHHHHHHHHHHHHHHH H         EEEEEEE     EEEE       HHH
SS_PSSPRED:    HHH                              EEEEE       HHHHHHHHHHHHHHHHHHH          EEEEEEE     EEEEE      HHH
DO_DISOPRED3:              DDDDDDDDDDDDD                                                                           
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       
CARBOHYD:                                                                                                      N   

                       10        20        30        40        50        60        70        80        90     
AA:            IHEALETTQYLNSFSHVGAGVVHAINAIVRSPRGGARRHAELSFVFLTDGVTGNDSLHESAHSMRKQNVVPTVLALGSDVDMDVLTTLSLGDRAAVFHEK 1000
PathogenicSAV:                                L                          K    T                                    
BenignSAV:                                       R                                            M V          HTT     
gnomAD_SAV:      DV K PPH YYSL M TSM#QTLDTV#CGAHDR#W  #  F M  M#SI#STEGVQQLVD#IH  KL#AAL DS CEM VVL  MF V# CTPM  KE
Conservation:  4100411204141241311550232103100110002101122253455524200131232022111232213332312121113022122311043110
SS_PSIPRED:    HHHHHH         HHHHHHHHHHHHHH          EEEEEEEE      HHHHHHHHHHHHH  EEEEEEEE     HHHHHHH      EEEE  
SS_SPIDER3:    HHHHHH          HHHHHHHHHHHHH           EEEEEEE      HHHHHHHHHHH H  EEEEEEEE     HHHHHHH H  HHHEEEE 
SS_PSSPRED:    HHHHHHH HHH    HHHHHHHHHHHHHHH        EEEEEEEEEE       HHHHHHHHHHHH  EEEEEEE      HHHHEH      EEEE  
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                           DDD DDD                                     
CARBOHYD:                                                           N                                              

                       10        2
AA:            DYDSLAQPGFFDRFIRWIC 1019
BenignSAV:     E    V   C    L    
gnomAD_SAV:    EHG  V RSCLNC LH T 
Conservation:  1401511124122312363
SS_PSIPRED:     HHHHH   HHHHHHHHH 
SS_SPIDER3:     HHHHH   HHHHH    E
SS_PSSPRED:     HHHHH HHHHHHHHHHH 
DO_DISOPRED3:                     
DO_SPOTD:                         
DO_IUPRED2A: