P13473  LAMP2_HUMAN

Gene name: LAMP2   Description: Lysosome-associated membrane glycoprotein 2

Length: 410    GTS: 6.097e-07   GTS percentile: 0.075     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


PathogenicSAV: 3      BenignSAV: 8      gnomAD_SAV: 121      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MVCFRLFPVPGSGLVLVCLVLGAVRSYALELNLTDSENATCLYAKWQMNFTVRYETTNKTYKTVTISDHGTVTYNGSICGDDQNGPKIAVQFGPGFSWIA 100
PathogenicSAV: L                                                                                                   
BenignSAV:                                                                                                 R      V
gnomAD_SAV:             S PE   #       W C    #         R          C      A  I    ER AMI    V  V   S   G   R V    V
Conservation:  0000000000000000011012010102111041311212752524130313041101100112030021131011706211100415131741322413
STMI:          SSSSSSSSSSSSSSSSSSSSSSSSSSSS                                                                        
SS_PSIPRED:     EEEEEE   HHHHHHHHHHH      EEEEEEE     EEEEEEEEEEEEEEEE     EEEEEEE     EE            EEEEEE   EEEEE
SS_SPIDER3:     EEEEEE    HHHHHHHHHH     EEEEEEEE     EEEEEEEEEEEEEEEEE    EEEEEE     EEE            EEEEEE   EEEEE
SS_PSSPRED:      EEEE      EEEEEHHHH      EEEEEEE     HHHHHHHEEEEEEEEEE    EEEEEEE     EE            EEEEEE    EEEE
DO_DISOPRED3:  BBBBDDDDDDDDDDDDDDDDDDDD                                                                            
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       
DISULFID:                                              C                                     C                     
CARBOHYD:                                     N     N          N        N                N                         

                       10        20        30        40        50        60        70        80        90     
AA:            NFTKAASTYSIDSVSFSYNTGDNTTFPDAEDKGILTVDELLAIRIPLNDLFRCNSLSTLEKNDVVQHYWDVLVQAFVQNGTVSTNEFLCDKDKTSTVAPT 200
BenignSAV:                  I                                                                                      
gnomAD_SAV:     L    CA  TG I   CS D   A L T         K        S H K S   A  N VI       PI G  R   M     PY      A#   
Conservation:  1521001061310414165425101732410120101000000030242152604000200102220322314555302332401022601401022132
SS_PSIPRED:    EEEE   EEEEEEEEEEEE              EEEEEE   EEE    EEEE    EEEE  EEEEEEEEEEEEEEE       EEEE           
SS_SPIDER3:    EEE   EEEEEEEEEEEEEE              EEE E E EE     EEEE  E EEEE  EEEEEEEEEEEEEEE                      
SS_PSSPRED:    EEE    EEEEEEEEEEEE               EEEE    EE     EEEE     EE    EEEEEEEEEEEEE                       
DO_DISOPRED3:                                                                                                   DDD
DO_SPOTD:                                                                                              DDDDDDDDDDDD
DO_IUPRED2A:                               D                                                                     DD
DISULFID:                                                          C                                   C           
CARBOHYD:      N                     N                                                       N               ST   T

                       10        20        30        40        50        60        70        80        90     
AA:            IHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQLNITQDKVASVININPNTTHSTGSCRSHTALLRLNSSTIKYLDFVFAVKNENRFYLKEVN 300
BenignSAV:      P           T                                     S   H                                            
gnomAD_SAV:     P I  F      T      R  L D      V   VV    M   E   IS   S I Y A   LP A     S     H  L              A 
Conservation:  2211121333201210180110814110312945713556333411110022641710301291910014190601100005060822121136271240
SS_PSIPRED:                         EEEEE    EEEEEEEEEEEEEEE  EEEEEEE     EEEEE    EEEEEEE    EEEEEEEEE    EEEEEEEE
SS_SPIDER3:                         EEEEEE  EEEEEEEEEEEEEEE   EEEEEE       EEEEE   EEEEEEEE   EEEEEEEEE    EEEEEEEE
SS_PSSPRED:                          EEEE    EEEEEEE  EEEEE     EEEEE      EE  E   EEEEEEE     EEEEEEE     EEEEEEEE
DO_DISOPRED3:  DDDDDDDDDDDDDDDD                                                                                    
DO_SPOTD:      DDDDDDDDDDDDDDDD                                                                                    
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDD                              D                                              
DISULFID:                                     C                                C                                   
CARBOHYD:        TT  S TTT T               N            N              N                 N                        N

                       10        20        30        40        50        60        70        80        90     
AA:            ISMYLVNGSVFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVTQGKYSTAQDCSADDDNFLVPIAVGAALAGVLILVLLAYFIGL 400
PathogenicSAV:          I          R                                                                               
BenignSAV:                                                                                     A                   
gnomAD_SAV:      V   S     L      C     *I     NQESL   R          I   S A R   I    G   #T I  MVA      L   A        
Conservation:  3020100010201040531051322517637114413051103143341634748140221632424701422224674365337235533332463353
STMI:                                                                                     MMMMMMMMMMMMMMMMMMMMMMMM 
SS_PSIPRED:    EEEEEE   EEEEE   EEEEEE     EE    EEEEE   EEEEEEEEEEEEEE         EE        HHHHHHHHHHHHHHHHHHHHHHHHH
SS_SPIDER3:    EEEEEE   EEEEE   EEEEEE    EEEE    EEEEE  EEEEEEEEEEEEEE     E   EE        HHHHHHHHHHHHHHHHHHHHHHHH 
SS_PSSPRED:    EEEE     EEE       EEE      EE    EEEEE   EEEEEEEEEEEEE                     HHHHHHHHHHHHHHHHHHHHHHHH
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       
DISULFID:                                    C                                    C                                
CARBOHYD:            N         N                                      N                                            

                       10
AA:            KHHHAGYEQF 410
gnomAD_SAV:     Y L      
Conservation:  5432456433
SS_PSIPRED:    H         
SS_SPIDER3:    H H       
SS_PSSPRED:              
DO_DISOPRED3:        DDDD
DO_SPOTD:       DDDDD DDD
DO_IUPRED2A:             
REGION:        KHHH