P20823  HNF1A_HUMAN

Gene name: HNF1A   Description: Hepatocyte nuclear factor 1-alpha

Length: 631    GTS: 1.002e-06   GTS percentile: 0.224     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


PathogenicSAV: 67      BenignSAV: 8      gnomAD_SAV: 319      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MVSKLSQLQTELLAALLESGLSKEALIQALGEPGPYLLAGEGPLDKGESCGGGRGELAELPNGLGETRGSEDETDDDGEDFTPPILKELENLSPEEAAHQ 100
PathogenicSAV: #          H  S   A#          D                K                                             L      
BenignSAV:                               L                        A                                             V  
gnomAD_SAV:      F P    M   ET  G R RRD VM   D RR     E DTQ  RKY DAS#       S  R  WD  #KMN N V# MA  H K  K    DVVLK
Conservation:  7212440560432036513623532533732420020221221141110102131010032341120213423233353231536344231423233112
SS_PSIPRED:          HHHHHHHHHHHH    HHHHHHHH                                                      HHHHHH   HHHHHHH
SS_SPIDER3:          HHHHHHHHHHHH    HHHHHHHH                                                               HHHHHH 
SS_PSSPRED:       HH HHHHHHHHHHHHH   HHHHHHHH                                                               HHHHHHH
DO_DISOPRED3:  DD                                   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD 
DO_SPOTD:      DDD                            DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                 
DO_IUPRED2A:   D                               D   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
MODRES_P:                                                                           S   T                  S       

                       10        20        30        40        50        60        70        80        90     
AA:            KAVVETLLQEDPWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKGTPMKTQKRAALYTWYVRKQREVAQQFTHAGQGGLIEEPTGDELPTKKGR 200
PathogenicSAV:       R    L    E    C     NT # M A      FY   Q          N# T                                      #
gnomAD_SAV:      M        L L VQII           Q  IE         P       SIRM  W T  A  IH  Q  VR*  R R    T      KP A   Q
Conservation:  3323422325677669746749767997999777635697997699799777776436954763663243236136633313312002213264216626
SS_PSIPRED:    HHHHHHHHHH HHHHHHHHHHHHHH    HHHHHH     HHHHHHHHH      HHHHHHHHHHHHH HHHHHHHHHH                     
SS_SPIDER3:    HHHHHHHH   HHHHHHHHHHHHHH    HHHHE      HHHHHHHH       HHHHHHHHHHHHH   HHHHHHHH                     
SS_PSSPRED:    HHHHHHHHH  HHHHHHHHHHHHHHH              HHHHHHHHH      HHHHHHHHHHHHHHH HHHHHHH                      
DO_DISOPRED3:                                                                               DDDDDDDDDDDDDDDDDDD    
DO_SPOTD:                                                                               DDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDD                    DDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                      DDDDDDDDDDDDDDDDDDDDDDD
DNA_BIND:                                                                                                        GR
MOTIF:                                                                                                         KKGR
REGION:                                     QRE          HLSQHLN     KTQK                                          

                       10        20        30        40        50        60        70        80        90     
AA:            RNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFRHKLAMDTYSGPPPGPGPGPALP 300
PathogenicSAV:   # Q       M          S    Q     G     G  I              DM  #F   S  ##  V#              R         
BenignSAV:                                                                                               S         
gnomAD_SAV:      C                        K* M   Q  SV       FL * L   T VIM  C       Q   AD QY   I M  RTHS   L TV S
Conservation:  9686788886659964797795694655773675375756646667566553757567999977669666674977975695482322232222221132
SS_PSIPRED:           HHHHHHHHHHHHH     HHHHHHHHHHHHHHHHHH    HHHH           HHHH    HHHHHHHHHHHHHH                
SS_SPIDER3:           HHHHHHHHHHHH      HHHHHHHHHHHHHHH       H H        E EEEEEH    HHHHHHHHHHHHH                 
SS_PSSPRED:           HHHHHHHHHHHHH     HHHHHHHHHHHHHHHHH     HHH          EEEEEE    HHHHHHHHHHHHH                 
DO_DISOPRED3:                                                                                 DDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDD DD  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD         DDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDD         DDDDDDDDDDDDDDDDDDDDDDDDDD DDDDDDDDDDDDD D                     DDDDDDDDDDDDDDDDDDDDDDD
DNA_BIND:      RNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFRH                     
MOTIF:         RNRFK                                                                                               
REGION:          RFKW                                                        RVY    NRRK                           
MODRES_P:                                                    S                                                     

                       10        20        30        40        50        60        70        80        90     
AA:            AHSSPGLPPPALSPSKVHGVRYGQPATSETAEVPSSSGGPLVTVSTPLHQVSPTGLEPSHSLLSTEAKLVSAAGGPLPPVSTLTALHSLEQTSPGLNQQP 400
PathogenicSAV:                                                                               T                     
BenignSAV:                                                                                             V           
gnomAD_SAV:    P   R  L  DP SG   A #CR #V       T R SDS   # I FQ G  M       M NR   V     #SP#HIRI K  Y V   Y D S  L
Conservation:  2432222221114311213334231212411210213211112112232135412533332551221323232461575544663463232222211323
SS_PSIPRED:                                                                                    HHHHHHH             
SS_SPIDER3:                                                                      HH               HHH              
SS_PSSPRED:                                                                                      HHHHH             
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DDDDDDDDDDDDDDDDDDDDD
MODRES_P:                  S                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            QNLIMASLPGVMTIGPGEPASLGPTFTNTGASTLVIGLASTQAQSVPVINSMGSSLTTLQPVQFSQPLHPSYQQPLMPPVQSHVTQSPFMATMAQLQSPH 500
PathogenicSAV:               R      P         C              L                                                     
BenignSAV:                                                                                           N             
gnomAD_SAV:       T   IH IT  R C   CP  M      C   V P  K   CMS              A L  L Y  D RQ I  M     #N    AT    RA 
Conservation:  4484645344334752222222222222222246359835254536545535445655976345344332234212122123422225553334355229
SS_PSIPRED:     HHHHH                                                                                 HHHHHHHHH    
SS_SPIDER3:      HEH      E                                                                           HHHHHHHHH    
SS_PSSPRED:      HHHH                                                                                 HHHHHHHHH    
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDD   DDDDD  DDDDDDDDDDDDDD                       D        DD DDD DDDDDDDDDDDDDDDDDDD DDDDDD     D D

                       10        20        30        40        50        60        70        80        90     
AA:            ALYSHKPEVAQYTHTGLLPQTMLITDTTNLSALASLTPTKQVFTSDTEASSESGLHTPASQATTLHVPSQDPAGIQHLQPAHRLSASPTVSSSSLVLYQS 600
PathogenicSAV:                   L                 R                 F                          RG          I      
BenignSAV:                  R                                                           S                          
gnomAD_SAV:    TV RN RK  E SRK  FR  V TSNII  T# V  M  E     A  T  G RFR L    I V#ALNRNA  N Y  L #QPTT S M PTG      
Conservation:  2583763532443333355433434623242223333314421323120122112211112222223122222222222222262222222222222432
SS_PSIPRED:                                 HHHH       EE                                                          
SS_SPIDER3:                           E     HHHH       EEE                               HHH                       
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   D  DDDD                            D D  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD        DDDDD 

                       10        20        30 
AA:            SDSSNGQSHLLPSNHSVIETFISTQMASSSQ 631
PathogenicSAV:                  MKI           
gnomAD_SAV:       R S       I  IMQ  #   KS   #
Conservation:  2222222222632222222222222324222
SS_PSIPRED:                  HHHHHHHHHHHHHH   
SS_SPIDER3:                    HHHHH          
SS_PSSPRED:                    HHHHHHHHHHHH   
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:    DDDDDDDDDDD  D      D      D