P28799  GRN_HUMAN

Gene name: GRN   Description: Progranulin

Length: 593    GTS: 2.321e-06   GTS percentile: 0.759     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


PathogenicSAV: 3      BenignSAV: 19      gnomAD_SAV: 348      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MWTLVSWVALTAGLVAGTRCPDGQFCPVACCLDPGGASYSCCRPLLDKWPTTLSRHLGGPCQVDAHCSAGHSCIFTVSGTSSCCPFPEAVACGDGHHCCP 100
PathogenicSAV: #       D                                                                                           
BenignSAV:                       W                                   W             T               A          R    
gnomAD_SAV:    L I    MV   R  S MQRLG H #  V   ESR #   #RG   N  L AV   RS RG I   RPTR   T  I  SF  YR L TM GRN R G  
Conservation:  4001212113223242411753421721255111120252660210111202121122118111216312367312210143665222523726316893
STMI:          SSSSSSSSSSSSSSSSS                                                                                   
SS_PSIPRED:     HHHHHHHHHHHHHHH              EE                                       EEE               EE         
SS_SPIDER3:     HHHHHHHHHHH  EE EE     E      E      EEE                              EE                EE     EE  
SS_PSSPRED:     HHHHHHHHHHHH           E                                                                EE         
DO_DISOPRED3:  DDDDDDDDDDDD                                                                                        
DO_SPOTD:         D                                                                                                
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            RGFHCSADGRSCFQRSGNNSVGAIQCPDSQFECPDFSTCCVMVDGSWGCCPMPQASCCEDRVHCCPHGAFCDLVHTRCITPTGTHPLAKKLPAQRTNRAV 200
BenignSAV:              Q         Y                    I                                        M                  
gnomAD_SAV:    WD##RG AR*F     DS YM  #  #   LKRL   MRRI IN   R R I#    Y   AYR L S   N  R C    M  PL  RQ  TR    T 
Conservation:  1711520230162101211321251634112385223787130231367953239398282168842341954122291110211341142551100011
SS_PSIPRED:      EEE     EE           EE     EE      EEE     EEE      EE     EE     EEE    EE                      
SS_SPIDER3:      EEE     EEE         EEE    EEE     EEEE     EEE    E EE     EE     EE     EE      E               
SS_PSSPRED:       EE                                 E                                     EE                      
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                    DD    
DO_IUPRED2A:                                                                                           DDD         
PEPTIDE:                             AIQCPDSQFECPDFSTCCVMVDGSWGCCPMPQASCCEDRVHCCPHGAFCDLVHTRCI                     
DISULFID:                               C      C     C         C                                                   
CARBOHYD:                       N                                                                                  

                       10        20        30        40        50        60        70        80        90     
AA:            ALSSSVMCPDARSRCPDGSTCCELPSGKYGCCPMPNATCCSDHLHCCPQDTVCDLIQSKCLSKENATTDLLTKLPAHTVGDVKCDMEVSCPDGYTCCRLQ 300
BenignSAV:             L           S                                                     L                         
gnomAD_SAV:       GLATRL TQ QS VDCASS   NA   R Q  #SPFS #R  Y #R S  YM   N    # T M   IE #V   E M R  DA     C Y C  
Conservation:  1010051844113183312677321131558752323467172179972442864122291101001013122222012222185111373222799221
SS_PSIPRED:                                         EE     EE     EE     EE         HHH                      EEE   
SS_SPIDER3:                 E     E                 EE     EE     EE     EEE                    E      E     EEEE  
SS_PSSPRED:                                                                                                  EEE   
DO_DISOPRED3:      D                                                                                               
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       
PEPTIDE:            VMCPDARSRCPDGSTCCELPSGKYGCCPMPNATCCSDHLHCCPQDTVCDLIQSKCL                   DVKCDMEVSCPDGYTCCRLQ
DISULFID:                                                                                         C     C     CC   
CARBOHYD:                                         N                            N                                   

                       10        20        30        40        50        60        70        80        90     
AA:            SGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQGPHQVPWMEKAPAHLSLPDPQALKRDVPCDNVSSCPSSDTCCQLTSGEWGCCPIPEAVCCSDH 400
BenignSAV:                                            L                                   N                     L  
gnomAD_SAV:    LE#      P  L          V  M  M  V     AQ AS I             V      YVD  T #  N   E MC   V   F   G  LN 
Conservation:  1617389832455862721689924228311112811110126411412411101001000012196102373112788220121958953225466142
SS_PSIPRED:                EE     EE     EE     EE                     HHH                          EE       EE    
SS_SPIDER3:       E        EE     EE     EE     EE     E               HHHH          E     E E      EE EE   EEE    
SS_PSSPRED:                EE                                                                                EE    
DO_DISOPRED3:                                                    D DDDDDDDD                                        
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                DDDD   D D                                             
PEPTIDE:       SGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCE                           VPCDNVSSCPSSDTCCQLTSGEWGCCPIPEAVCCSDH
DISULFID:           CC      CC     CC     C      C                              C     C     C         C        C   
CARBOHYD:                                                                         N                                

                       10        20        30        40        50        60        70        80        90     
AA:            QHCCPQGYTCVAEGQCQRGSEIVAGLEKMPARRASLSHPRDIGCDQHTSCPVGQTCCPSLGGSWACCQLPHAVCCEDRQHCCPAGYTCNVKARSCEKEVV 500
BenignSAV:                                     Q                   R                                               
gnomAD_SAV:     YG     MYI DVL  QRC  M  V   A HWV    R  #SYN#Y N LAR PS L PS N     F Y   RK H Y FLT  # S  VP  K G I
Conservation:  0465812213011106011111334213114100010011120841111832435862112315588641385992832777715336421124823000
SS_PSIPRED:     EE     EE    EE         EEE                                            EE     EE     EEE    EE     
SS_SPIDER3:     EE     E      EEE    E    E                    E     E        EE      EEE     EE     EE     EE     
SS_PSSPRED:            EE                                                                            EE            
DO_DISOPRED3:                          DD    DDDDDDDD                                                             D
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                             D DDD D                                                                   
PEPTIDE:       QHCCPQGYTCVAEGQCQ                                                                                   
DISULFID:         C     C     C                                                                                    

                       10        20        30        40        50        60        70        80        90   
AA:            SAQPATFLARSPHVGVKDVECGEGHFCHDNQTCCRDNRQGWACCPYRQGVCCADRRHCCPAGFRCAARGTKCLRREAPRWDAPLRDPALRQLL 593
BenignSAV:                   A                                                H                             
gnomAD_SAV:     # AG    H   MS   E Y        T N SG# #RD  YR  #  I RV GH    TDSL T  S R  # KSLCGVT    SS  *V 
Conservation:  110111011110000101318521207111269821202185887213628608223778054181111119100001272111101121113
SS_PSIPRED:          EEE         EE    EE     EEE               EE     EE     EE     EE         HHH  HHHHHH 
SS_SPIDER3:          EE          E      EE             E        EE     EE    EEE     EE E                   
SS_PSSPRED:                                                                   EE     EE              HHHHHH 
DO_DISOPRED3:  DDDDDD  D                                                                      DDD  DDDDDDDDD
DO_SPOTD:                                                                                          DDDDDDDDD
DO_IUPRED2A:                                                                                                
CARBOHYD:                                   N