P33076  C2TA_HUMAN

Gene name: CIITA   Description: MHC class II transactivator

Length: 1130    GTS: 1.349e-06   GTS percentile: 0.378     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


PathogenicSAV: 2      BenignSAV: 19      gnomAD_SAV: 748      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MRCLAPRPAGSYLSEPQGSSQCATMELGPLEGGYLELLNSDADPLCLYHFYDQMDLAGEEEIELYSEPDTDTINCDQFSRLLCDMEGDEETREAYANIAE 100
BenignSAV:                                                 V                                                       
gnomAD_SAV:    TC P# CR  Y#P G     HFS  DMRL KCS MGIF  NVN V       *#G P#  KTA  *G E GA     L T      V K I    T  T 
Conservation:  7000000001100000101111012221121221213312113311210002010211042012003211210313212223222312621042422612
SS_PSIPRED:                                     HHHHH     HHHHHEEE       HHHHH           HHHHHHHHHHHH    HHHHHHHHHH
SS_SPIDER3:                         EEEEEE      HHHHH      HHEEEEE                       HHHHHHHHHHH   HHHHHHHHHHHH
SS_PSSPRED:                                    HHHHHH     HHHHHE          HHHH           HHHHHHHHHHH    HHHHHHHHHHH
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDD                               DDDDDDDDDDD                                 
DO_SPOTD:      DDDDDDDDDDDDDDDDDDD                                                                                 
DO_IUPRED2A:                 DD      DD                                   DDDDDDDDDDD                      DD      

                       10        20        30        40        50        60        70        80        90     
AA:            LDQYVFQDSQLEGLSKDIFKHIGPDEVIGESMEMPAEVGQKSQKRPFPEELPADLKHWKPAEPPTVVTGSLLVRPVSDCSTLPCLPLPALFNQEPASGQM 200
BenignSAV:                            T                             N          S        G                       S  
gnomAD_SAV:      KS    CLV    Q L   # TH AMR  TQ #  A KTN   S  GDPLTE  Y  LGKTLN A  G      #NYYPM  M  SV # # T  S# 
Conservation:  4122322602310112022001011300030010111010411111111001112614213211212221210031101110001110100100112111
SS_PSIPRED:    HHHHHHH        HHHHHHH HHHHH       HH                            EE                      HH         
SS_SPIDER3:    HHHHH          HHHHHH  HHH                                       EE       E                         
SS_PSSPRED:    HHHH           HHHHHH                                                                               
DO_DISOPRED3:                     DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:                                     DDDDDDDDDDDDDDDDDDDDDDDDDDD    D        D  DDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:                                DDDDDDDDDDDDDDDDDD DDDDDDDD DDD                                  DDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            RLEKTDQIPMPFSSSSLSCLNLPEGPIQFVPTISTLPHGLWQISEAGTGVSSIFIYHGEVPQASQVPPPSGFTVHGLPTSPDRPGSTSPFAPSATDLPSM 300
BenignSAV:                                   S                                                                     
gnomAD_SAV:    C Q#NNH L S P  L       DES#RY L T P LY F K   S #  TNTV   D LS TRR LA       S RAF  # #     V    E   V
Conservation:  0211110110121011101112111112220122014112201221221222232322012010012521312214231300303415324312122220
SS_PSIPRED:                                           EEE           EEE                                            
SS_SPIDER3:                                           EEE           EE                              E              
SS_PSSPRED:                                                         EEE                                            
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDD                                   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDD      DD                        D                   D   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            PEPALTSRANMTEHKTSPTQCPAAGEVSNKLPKWPEPVEQFYRSLQDTYGAEPAGPDGILVEVDLVQARLERSSSKSLERELATPDWAERQLAQGGLAEV 400
gnomAD_SAV:        QIFPE V#   MF  #FR #AKFCS   ECSKQM R  HL   M V KHT L S   D   A  S DGR#R T  # PD#LGG  Q  P   P   
Conservation:  1114522020123011220012110101111221521521410033102011311021124411433122252115225443210311233210212224
SS_PSIPRED:                             HH        HHHHHHHHHHHHHH            HHHEEEHHHHH   HHHHHHHH   HHHHHHHH  HHHH
SS_SPIDER3:                                         HHHHHHHHHHHH       H  EEEEEEEE E       HHHHHH    HHHHHH    HHHH
SS_PSSPRED:                                         HHHHHHHHHHHH         EEEEEEEEE HHH     HHHHHHH    HHHHHHH HHHHH
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD D                                            DDDD DDDDD          DDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                          DDDDDD                      
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD     D      DDDDD   DD                    DDDDDDDDDDDD  D           

                       10        20        30        40        50        60        70        80        90     
AA:            LLAAKEHRRPRETRVIAVLGKAGQGKSYWAGAVSRAWACGRLPQYDFVFSVPCHCLNRPGDAYGLQDLLFSLGPQPLVAADEVFSHILKRPDRVLLILDG 500
PathogenicSAV:                                                                     P                               
BenignSAV:                                                                                 I                  F   A
gnomAD_SAV:      V R  QQ C  QM VA          C  S  P# VS Q SR N AV  R  YWSHLEE C  H    #P   #PAVV#K   LMFRT GCLRF  ES
Conservation:  6100000110114223344923726751333243249505142373647143320522121022732673112104200013441353316145855695
SS_PSIPRED:    HHHHH        EEEEEE      HHHHHHHHHHHHH        EEEEEEHHHH      EEHHHHHHH        HHHHHHHHHH   EEEEEE  
SS_SPIDER3:    HHHH         EEEEEE      HHHHHHHHHHHHH       EEEEEEE         EEEHHHHHHH        HHHHHHHHHH    EEEEEE 
SS_PSSPRED:    HHH         EEEEEEE      HHHHHHHHHHHHHH      EEEEEE             HHHHHHHH       HHHHHHHHHH   EEEEEEE 
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       
NP_BIND:                          GKAGQGKS                                                                         

                       10        20        30        40        50        60        70        80        90     
AA:            FEELEAQDGFLHSTCGPAPAEPCSLRGLLAGLFQKKLLRGCTLLLTARPRGRLVQSLSKADALFELSGFSMEQAQAYVMRYFESSGMTEHQDRALTLLRD 600
gnomAD_SAV:     QA #VH VIP G *RR LVD#S FWR   S       Q  A FF  Q #S V H MR   D     S P   S   MTH L    I#G   K VMF Q 
Conservation:  4334211623220221201010123435445635524628875654474432303242646133730774114321631256111201201113211431
SS_PSIPRED:    HHHH                    HHHHHHHHH        EEEEE   HHHH   HHH  EEEEEE   HHHHHHHHHHH      HHHHHHHHHHHHH
SS_SPIDER3:                            HHHHHHHH         EEEEE          H H  EEEEEE   HHHHHHHHHHH      HHHHHHHHHHHH 
SS_PSSPRED:                            HHHHHHHHHHHHH    EEEEE          HHHH EEEEEE   HHHHHHHHHHHH     HHHHHHHHHHHHH
DO_DISOPRED3:       DDD DDDDDDDDDDDD                                                                               
DO_SPOTD:              D                                                                                           
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            RPLLLSHSHSPTLCRAVCQLSEALLELGEDAKLPSTLTGLYVGLLGRAALDSPPGALAELAKLAWELGRRHQSTLQEDQFPSADVRTWAMAKGLVQHPPR 700
BenignSAV:                                                              G                                D         
gnomAD_SAV:    #S  F      A  PVL R#  VM   R  T #     E  #    H V N S#A QGD TQV C   C Y  NPLQ *L# T#M A VID # IR QLW
Conservation:  1134134533923932372333101111100048185624231241022000101151053137323331212120100112112224421043302001
SS_PSIPRED:     HHHHHH  HHHHHHHHHHHHHHHHH        HHHHHHHHHHHHHHH    HHHHHHHHHHHHHHHHH   EE HHH  HH   HHHHH   EE    
SS_SPIDER3:      HHHHH  HHHHHHHHHHHHHHHHH        HHHHHHHHHHHHHH     HHHHHHHHHHHHHHHH     E HHH       HHHHH   EEE   
SS_PSSPRED:      HHHHH H HHHHHHHHHHHHHHHH        HHHHHHHHHHHHHHH    HHHHHHHHHHHHHHHHH HH             HHHHHH        
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            AAESELAFPSFLLQCFLGALWLALSGEIKDKELPQYLALTPRKKRPYDNWLEGVPRFLAGLIFQPPARCLGALLGPSAAASVDRKQKVLARYLKRLQPGT 800
BenignSAV:                               Q                                                     LA                  
gnomAD_SAV:     TDYQVG SN  V     # *  V  KM ER  L HV SA  R K C    G MA# P  M   THTCY   I #TWVDVLAVS K   V    W  R  
Conservation:  0110102623324636435326223113234142214121234762222223233453286252201001122200101101024521412353152120
SS_PSIPRED:        EEE   HHHHHHHHHHHHHH        HHHHHH              HHHHHHHHHH    HHHHHHHH     HHHHHHHHHHHHHHHHH    
SS_SPIDER3:       EEEE   HHHHHHHHHHHHHH       H   HH             HHHHHHHHHHH  HH HHHHHHHH     HHHHHHHHHHHHHHHH     
SS_PSSPRED:        EEEEHHHHHHHHHHHHHHHH       HHHHHHHH           HHHHHHHHHHH     HHHHHHHH    HHHHHHHHHHHHHHHHHH    
DO_DISOPRED3:                                        DD D                                                          
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            LRARQLLELLHCAHEAEEAGIWQHVVQELPGRLSFLGTRLTPPDAHVLGKALEAAGQDFSLDLRSTGICPSGLGSLVGLSCVTRFRAALSDTVALWESLQ 900
BenignSAV:       V                                                                                                R
gnomAD_SAV:    MQVW  V     T   K P    DM  D RRC    SIC #L NVRLM    KSV   C   F#G D  S   E  ME    #H    #NNAMV #DY R
Conservation:  5041467446353484110051133411631053805216154633451035214131536653252511176315337225115752316440794183
SS_PSIPRED:      HHHHHHHHHHHHHH  HHHHHHHHHH    EEE      HHHHHHHHHHHHH    EEEE       HHHHHHHH   HHHHHHHHHHHHHHHHHHHH
SS_SPIDER3:      HHHHHHHHHHHHH    HHHHHHH H    EEEE     HHHHHHHHHHHHH    EEEEE      HHHHHH      HHHHHHHH  HHHHHHHHH
SS_PSSPRED:      HHHHHHHHHHHHHHH HHHHHHHHHH   EEEE       HHHHHHHHHHHH     EEE       HHHHHHH    HHHHHHHHHHHHHHHHHHH 
DO_DISOPRED3:                                                                                                     D
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            QHGETKLLQAAEEKFTIEPFKAKSLKDVEDLGKLVQTQRTRSSSEDTAGELPAVRDLKKLEFALGPVSGPQAFPKLVRILTAFSSLQHLDLDALSENKIG 1000
PathogenicSAV:                                                              S                                      
BenignSAV:                                                                               R                         
gnomAD_SAV:     R   #IFRTS K  SSKAL V Y  A KE   F   R M CALAYIT      P   N  YV  SF     L R  Q  M   F R V  GVM #  MR
Conservation:  2024013730321761528645242266138106624310332103000146852263264536831053135235212412312623667524256245
SS_PSIPRED:    H   HHHHHHHHHHH  HHHH      HHHHHHHH     HHHHHHHHHH HH     EEE          HHHHHHHHH       EEE          
SS_SPIDER3:    H    HHHHHHHH    HHH      HHH HHHHH     HHHHHHHHHHHHH     EEEE       HHHHHHHHHHH       EEEE         
SS_PSSPRED:        HHHHHHHHHHHHHHHHHHHH   HHHHHHHH     HHHHHHHHHHHH      HHHH       HHHHHHHHHHHHH     EEE          
DO_DISOPRED3:  DDDDDDD                                                                                             
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                      DDDDD DDDDDDDD                                                   

                       10        20        30        40        50        60        70        80        90     
AA:            DEGVSQLSATFPQLKSLETLNLSQNNITDLGAYKLAEALPSLAASLLRLSLYNNCICDVGAESLARVLPDMVSLRVMDVQYNKFTAAGAQQLAASLRRCP 1100
BenignSAV:               L                                                                                         
gnomAD_SAV:    NK# WL  #ILS  T  K           P  C  #K   LI#V  F   WH  Y YNM  K   C  LVL T Q   I     M  R  # T G Q   
Conservation:  5153117312410712833758858274608422850473152038236666270837198335813881504821545248345338732851496362
SS_PSIPRED:    HHHHHHHHHH        EEE       HHHHHHHHHHH        EEE       HHHHHHHHHHHHH     EEE       HHHHHHHHHHHHH  
SS_SPIDER3:    HHHHHHHHHH        EEE       HHHHHHHHHH      EEEEEE       HHHHHHHHHHHHH     EEE       HHHHHHHHHHHHH  
SS_PSSPRED:     HHHHHHHHH                   HHHHHHHHHHHHH HHHHHEEE      HHHHHHHHHHHHH     EEE      HHHHHHHHHHHHHH  
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30
AA:            HVETLAMWTPTIPFSVQEHLQQQDSRISLR 1130
gnomAD_SAV:    RLQA V  M    LTI      H       
Conservation:  154462675215744434573347288121
SS_PSIPRED:       EEE       HHHHHHHHH        
SS_SPIDER3:     E EEEEE     HHHHHHHH         
SS_PSSPRED:     EEEEE       HHHHHHHHHH       
DO_DISOPRED3:                         DDDD  D
DO_SPOTD:                              DDDDDD
DO_IUPRED2A: