P41229  KDM5C_HUMAN

Gene name: KDM5C   Description: Lysine-specific demethylase 5C

Length: 1560    GTS: 3.095e-07   GTS percentile: 0.011     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


PathogenicSAV: 27      BenignSAV: 10      gnomAD_SAV: 294      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MEPGSDDFLPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNFRFTPRIQRLNELEAQTRVKLNYLDQIAKFWEIQGSSL 100
PathogenicSAV: V                            C                     C                      P T         G             
gnomAD_SAV:         N   L                          V                    MK      I Q                                
Conservation:  1110001001100121012111110111000011111111001211111125354544432253647556655685734566855664456554344525
SS_PSIPRED:                        HHHH  HHHHHHHHHHHHHHH  EEEE                 EE     HHHHHHH    HHHHHHHHHHHHHH    
SS_SPIDER3:                   EEE  HHHHH HHHHHHHHHHHHHHH EEEEE         E  H H EE  EEE HHHHHH    HHHHHHHHHHHHHH     
SS_PSSPRED:                        HHHHH HHHHHHHHHHHHHH   EEEE         EE            HHHHHHHHH  HHHHHHHHHHHHHHH    
DO_DISOPRED3:  DDDDDDDDD DDD    DDDDDDDDDDDDD         D DD                                                         
DO_SPOTD:      DDDDDD                                                                                              
DO_IUPRED2A:   DDDDDD  DD                                                                                          

                       10        20        30        40        50        60        70        80        90     
AA:            KIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMYQSGANLVQCNTRPFDNEEKDKEYKPHSIPLRQS 200
PathogenicSAV:                                                                                                  Q  
gnomAD_SAV:    N     W#       R    Q           W   I  H S           H    C         P    L    C I S            A    
Conservation:  4471334326554173456135877425555638546524517335653855552756544575336326342220111310131121301014313121
SS_PSIPRED:       EE   EEEHHH HHHHHH   HHHHH    HHHHHHH        HHHHHHHHHHHHH  HHHHH                                
SS_SPIDER3:       EE  EEE  EH  HHHHH   HHHHH    HHHHHEE        HHHHHHHHHHHH   HHHH                                 
SS_PSSPRED:             EEEE      HHH  HHHHHH  HHHHHHHHH       HHHHHHHHHHHHH  HHHHHH                               
DO_DISOPRED3:                                                                            DDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:                                                                                  DDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:                                                                               DDDDDDDDDDDDDDDDDDDDDD  

                       10        20        30        40        50        60        70        80        90     
AA:            VQPSKFNSYGRRAKRLQPDPEPTEEDIEKNPELKKLQIYGAGPKMMGLGLMAKDKTLRKKDKEGPECPPTVVVKEELGGDVKVESTSPKTFLESKEELSH 300
BenignSAV:                                                                                                       N 
gnomAD_SAV:          S       I            GN                        NRP #     V  Y    A       N     AL QS     DQ N 
Conservation:  1311212102455453313121113222334354232211231312110101425111111111111111111114100100111111111111111111
SS_PSIPRED:                              HH  HHHHH                                   EEE                HHH  HHHH  
SS_SPIDER3:              HH           H  HH  HHHHH                                   EE        E         HHHH H    
SS_PSSPRED:                                                                            E                           
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDD  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD          DDDDDDDDDDDDDDDDDDDDDDDDDD  DDD  DDDDDDDDDDDDDDDDD 
MODRES_P:                                                                                            S             

                       10        20        30        40        50        60        70        80        90     
AA:            SPEPCTKMTMRLRRNHSNAQFIESYVCRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCVMAECKRPPEAFGFEQATREYTLQSFGEM 400
PathogenicSAV:                                                                                        P            
gnomAD_SAV:      Q              D P   T                               S       S        I   RWL             S  T    
Conservation:  0002011111303112031235524383372253345665475584434754582876153645285683643354246245565655133555444555
SS_PSIPRED:             HH        HH HHHH             EE                                                 EEEHHHHHHH
SS_SPIDER3:             HHH       H     E            EEE E       HEH             E    EHEE                  HHHHHHH
SS_PSSPRED:                       HHHHHHHH                                                                  HHHHHHH
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDD                                                                                
DO_SPOTD:      DDDDDDDDDDDDDDDDDDD                                                                                 
DO_IUPRED2A:    DDDDDDDDDD                                                                                         
ZN_FING:                                VCRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCV                            
MODRES_P:      S               S                                                                                   

                       10        20        30        40        50        60        70        80        90     
AA:            ADSFKADYFNMPVHMVPTELVEKEFWRLVNSIEEDVTVEYGADIHSKEFGSGFPVSDSKRHLTPEEEEYATSGWNLNVMPVLEQSVLCHINADISGMKVP 500
PathogenicSAV:  Y                                                R                            L                   L
gnomAD_SAV:              I                     K                          W                  L                 I   
Conservation:  4536544686475675454457547647623655676977867735555868882024101622355193157656554645224574654457677667
SS_PSIPRED:    HHHHHHHH         HHHHHHHHHHHH      EEEEEEEE                    HHHHHHHH                             
SS_SPIDER3:    HHHHHHHH         HHHHHHHHHHHH      EEEEEEEE                    HHHHHHHH                E            
SS_PSSPRED:    HHHHHHHH         HHHHHHHHHHHHH     EEEEE                        HHHHH                HHH           H
DO_DISOPRED3:                                                            D    DDD                                  
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       
BINDING:                                              Y                                                            

                       10        20        30        40        50        60        70        80        90     
AA:            WLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKKLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRA 600
PathogenicSAV:              L                       L               T                            F               C 
gnomAD_SAV:          I               V                         I                             RS                  H 
Conservation:  7777776675777779777769676765847576684850665356154324467652266879868884888639534448647769779777569757
SS_PSIPRED:    EEEEEE EEEEEEE       EEEEEE     EEEEE HHHHHHHHHHHHHH HHHHHH   HHHHHH    HHHHHH    EEEEE     EEEE    
SS_SPIDER3:    EEEE EEEEEEEEEE    E EEEEE      EEEEE HHHHHHHHHHHHHH HHHH   H HHHHHHH   HHHHHH    EEEEEE    EEEE    
SS_PSSPRED:    HHHHHHHHHHH                     EEEE  HHHHHHHHHHHHHH HHHHHH HHHHHHHHHH  HHHHHH    EEEEEE   EEEEE    
DO_DISOPRED3:                                                                  DDDDDDDD                            
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       
BINDING:                            S N       K                                                                    
METAL:                      H E                                                                                    

                       10        20        30        40        50        60        70        80        90     
AA:            YHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMAACPEKLDLNLAAAVHKEMFIMVQEERRLRKALLEKGITEAEREAFELL 700
PathogenicSAV:                      C                   L                                                       K  
gnomAD_SAV:                            V    V    W                 T             #    V      C   V    D     Q      
Conservation:  6556666667766765567467542862762886161878887757746477234306542683351564014424821672040337411223214524
SS_PSIPRED:              HHHH     HHH HHHHHHHHHHHHH       HHHHHHHHHH HHH  HHHHHHHHHHHHHHHHHHHHHHHHHHH   HHHHHHHHH  
SS_SPIDER3:              HHHH    HHHH H  HHHHHHHHH        HHHHHHHHH       HHHHHHHHHHHHHHHHHHHHHHHHHHH    HHHHHH    
SS_PSSPRED:                        HHHHHHHHHHHHHHHHH H    HHHHHHHHHH      HHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHH  
DO_DISOPRED3:                                        DDD                                                  DDDDDDDDD
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       
METAL:          H                                                                                                  

                       10        20        30        40        50        60        70        80        90     
AA:            PDDERQCIKCKTTCFLSALACYDCPDGLVCLSHINDLCKCSSSRQYLRYRYTLDELPAMLHKLKVRAESFDTWANKVRVALEVEDGRKRSLEELRALESE 800
PathogenicSAV:                  P            F                  WC              W                                  
gnomAD_SAV:                       S  N  E F     VS  Y#                          # G   N     Q        Q  R Q   T   K
Conservation:  6965697039588866765272324213696382127806301121626662443822441363146325418312711252130215224026316314
SS_PSIPRED:          HHH      EEEE        EEEHHHHHHH       EEEEEEE HHHHHHHHHHHHHHHH HHHHHHHHHHHHHH       HHHHHHHHHH
SS_SPIDER3:         E  E   EEEEEEEE       EEEHHHHHHH        EEEEEE HHHHHHHHHHHHHHH  HHHHHHHHHHHHHH       HHHHHHHHHH
SS_PSSPRED:      HHHHHHHHHHHHHHHHH        EEEEHHHHHH     HHHEEEEE  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH      HHHHHHHHHHH
DO_DISOPRED3:  D                                                                                        DDDDDDDDDDD
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                D      
ZN_FING:             CIKCKTTCFLSALACYDCPDGLVCLSHINDLCKCSSSRQYLRYRYTLDELPAM                                         

                       10        20        30        40        50        60        70        80        90     
AA:            ARERRFPNSELLQQLKNCLSEAEACVSRALGLVSGQEAGPHRVAGLQMTLTELRAFLDQMNNLPCAMHQIGDVKGVLEQVEAYQAEAREALASLPSSPGL 900
BenignSAV:                                       S                                                    C            
gnomAD_SAV:     # Q   I       N    G    M Q    I SR P  Y M       I  Q                  I S     D    K #     P    E 
Conservation:  5214176332542373033033306111422652122111121111245314732662330165814143125424611442541242135011311132
SS_PSIPRED:    HHH      HHHHHHHHHHHHHHHHHHHHHHHH                HHHHHHHHHHHH         HHHHHHHHHHHHHHHHHHHHHH     HHH
SS_SPIDER3:    HHH      HHHHHHHHHHHHHHHHHHHHHHHH                HHHHHHHHHHHH        HHHHHHHHHHHHHHHHHHHHHHH     HHH
SS_PSSPRED:    HHHH    HHHHHHHHHHHHHHHHHHHHHHHHHH               HHHHHHHHHHHHH        HHHHHHHHHHHHHHHHHHHHHH     HHH
DO_DISOPRED3:  D  D DD                           DDDDDDDDDDDDDD                                                    
DO_SPOTD:                                         DDDDDDDD                                                         
DO_IUPRED2A:                                                                                                       
MODRES_P:                                                                                                  S   S   

                       10        20        30        40        50        60        70        80        90     
AA:            LQSLLERGRQLGVEVPEAQQLQRQVEQARWLDEVKRTLAPSARRGTLAVMRGLLVAGASVAPSPAVDKAQAELQELLTIAERWEEKAHLCLEARQKHPPA 1000
gnomAD_SAV:    R      EW  E   S   H  W    VG      CA GS  QW    I Q   IT T     L      VK               D       R    
Conservation:  6317561511616146420063133354297227313113011124821662852272253432256334638786765653576652156225523231
SS_PSIPRED:    HHHHHHHHHHH    HHHHHHHHHHHHHHHHHHHHHHH        HHHHHHHHHHHHH    HHHHHHHHHHHHHHHHHHHHHHHHHHHHH      HH
SS_SPIDER3:    HHHHHHHHHH      HHHHHHHHHHHHHHHHHHHHH         HHHHHHHHHHHHH       HHHHHHHHHHHHHHHHHHHHHHHHHH      HH
SS_PSSPRED:    HHHHHHHHHHH    HHHHHHHHHHHHHHHHHHHHHHH      H HHHHHHHHHHHH      HHHHHHHHHHHHHHHHHHHHHHHHHHHHH     HH
DO_DISOPRED3:                     D          D DDDD                                                                
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                  D                                                                          D  D      

                       10        20        30        40        50        60        70        80        90     
AA:            TLEAIIREAENIPVHLPNIQALKEALAKARAWIADVDEIQNGDHYPCLDDLEGLVAVGRDLPVGLEELRQLELQVLTAHSWREKASKTFLKKNSCYTLLE 1100
PathogenicSAV:                       R                                                                             
gnomAD_SAV:    I     H V SM        V        W                                   K                              M   
Conservation:  2722431532063327553229443515833931554243133224142171354237324561721513652542243295526333830344134757
SS_PSIPRED:    HHHHHHHHHH      HHHHHHHHHHHHHHHHHHHHHHHH       HHHHHHHHHHHH     HHHHHHHHHHHHHHHHHHHHHHHHH     HHHHHH
SS_SPIDER3:    HHHHHHHHHH      HHHHHHHHHHHHHHHHHHHHHHHH       HHHHHHHHHHH      HHHHHHHHHHHHHHHHHHHHHHHHH      HHHHH
SS_PSSPRED:    HHHHHHHHHHH     HHHHHHHHHHHHHHHHHHHHHHHH       HHHHHHHHHHH      HHHHHHHHHHHHHHHHHHHHHHHHH     HHHHHH
DO_DISOPRED3:                                                                 D D                                  
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            VLCPCADAGSDSTKRSRWMEKELGLYKSDTELLGLSAQDLRDPGSVIVAFKEGEQKEKEGILQLRRTNSAKPSPLASSSTASSTTSICVCGQVLAGAGAL 1200
PathogenicSAV:                                                M                                                    
gnomAD_SAV:      SA   VS    RH Q V      H#                A   MS                C      N  # LNM   IAT          V   
Conservation:  7657214231010141302123011121111232425352344434413622241493323205712921621201111110020137492211312233
SS_PSIPRED:    HHHHHHH     HHHHHHHHHHH      HHHH   HHH      EEHHHHHHHHHHHHHHHHHHHHH                 EEEE          E
SS_SPIDER3:    HHHHHH       HHHHHHHHH        HH            HHHHHHHH HHHHHHHHHHHHH                   EEEE         EE
SS_PSSPRED:    HHHHHH       HHHHHHHHHH                                HHHHHHHHHHHH                  EEEE       HHHH
DO_DISOPRED3:     DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                  
DO_SPOTD:                                                                  DD DDDDDDDDDDDDDDDDDDD                  
DO_IUPRED2A:                                                               DDDD        DDDDD                       
ZN_FING:                                                                                             ICVCGQVLAGAGAL

                       10        20        30        40        50        60        70        80        90     
AA:            QCDLCQDWFHGRCVSVPRLLSSPRPNPTSSPLLAWWEWDTKFLCPLCMRSRRPRLETILALLVALQRLPVRLPEGEALQCLTERAISWQGRARQALASED 1300
BenignSAV:                                                                S                                        
gnomAD_SAV:               Q  P  HR RFL    I AL         R        *   C K   S   T                           T R      
Conservation:  6938954268218511111112101110111122364113167952925736748336438645833445676575683455676429835553332202
SS_PSIPRED:    E      EE HHH                    HH          HHH      HHHHHHHHHHHH       HHHHHHHHHHHHHHHHHHHHHHH    
SS_SPIDER3:    EE     EE   HEE                 HHH     EEE HHHH      HHHHHHHHHHHH       HHHHHHHHHHHHHHHHHHHHHHH    
SS_PSSPRED:    HH                                       E          HHHHHHHHHHHHHHH      HHHHHHHHHHHHHHHHHHHHHHHHHHH
DO_DISOPRED3:                     DDDDDDDDDDDDDD                                                                   
DO_SPOTD:                                                                                                        DD
DO_IUPRED2A:                       D                                                                               
ZN_FING:       QCDLCQDWFHGRCVSVPRLLSSPRPNPTSSPLLAWWEWDTKFLCPLCM                                                    

                       10        20        30        40        50        60        70        80        90     
AA:            VTALLGRLAELRQRLQAEPRPEEPPNYPAAPASDPLREGSGKDMPKVQGLLENGDSVTSPEKVAPEEGSGKRDLELLSSLLPQLTGPVLELPEATRAPLE 1400
BenignSAV:                                                                                                     V   
gnomAD_SAV:              FCPQ    H T      R    A          IL   C  G   N   L   VL  A   G#R   F      A    Q     WVL  
Conservation:  3102110110201111110111111111111111111221112112222421322211222112111110112121313225232434534321220254
SS_PSIPRED:    HHHHHHHHHHHHHHHHH                             HH           HHH           HHHHHH             HH  HHHH
SS_SPIDER3:    HHHHHHHHHHHHHHHH                   H                                     HHHH                     HH
SS_PSSPRED:    HHHHHHHHHHHHHHHHH                                                                            HHHHHHH
DO_DISOPRED3:            DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:       D             DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:                DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD    D DDDDDDDDDDDDDDDD
MODRES_P:                                                                S                                         

                       10        20        30        40        50        60        70        80        90     
AA:            ELMMEGDLLEVTLDENHSIWQLLQAGQPPDLERIRTLLELEKAERHGSRARGRALERRRRRKVDRGGEGDDPAREELEPKRVRSSGPEAEEVQEEEELEE 1500
BenignSAV:                                       C         H                                                       
gnomAD_SAV:      #   E F                   LHV   H  M      # R     W    QWQW   W    #G  Q   GA  L                 K
Conservation:  3844474576648572215412522110400110112011100111101021111343140211111101110311201422111111035231433121
SS_PSIPRED:    HHHHH   EE  HHHHHHHHHHHH      HHHHHHHHHHHHHHHHHHHH   HHHHHHHHHHH       HHHH             HHHHHHHHHHHH
SS_SPIDER3:    HHHH   H    HHHHHHHHHHHH      HHHH HHHHHHHHH H  H      HHH   E         H HHH             HHHHHHHHHHH
SS_PSSPRED:    HHHH        HHHHHHHHHHHHH     HHHHHHHHHHHHHHHH        HHHHHHH                              HHHHHHH  
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDD      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60
AA:            ETGGEGPPAPIPTTGSPSTQENQNGLEPAEGTTSGPSAPFSTLTPRLHLPCPQQPPQQQL 1560
BenignSAV:                                     P   L        Q              
gnomAD_SAV:          S#        # I G      L    P   L   F  I Q   LG   L   RF
Conservation:  111111111111111111111111111111122002102020111110123322211111
SS_PSIPRED:                                                                
SS_SPIDER3:                                                                
SS_PSSPRED:                                                           HHH  
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD