Q02742  GCNT1_HUMAN

Gene name: GCNT1   Description: Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase

Length: 428    GTS: 1.639e-06   GTS percentile: 0.509     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


      BenignSAV: 2      gnomAD_SAV: 204      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MLRTLLRRRLFSYPTKYYFMVLVLSLITFSVLRIHQKPEFVSVRHLELAGENPSSDINCTKVLQGDVNEIQKVKLEILTVKFKKRPRWTPDDYINMTSDC 100
gnomAD_SAV:       M QQM     LS    V    YV    IIK R   K   F Y K    SR  E    NI * GI       PK    RCE CSQ ITEN V ISNVY
Conservation:  0100111111111111111111111111100100000000000001130111100024632521440123011131142101121002220172216157
STMI:                   MMMMMMMMMMMMMMMMMMMMMMM                                                                    
SS_PSIPRED:     HHHHHHHHH  HHHHHHHHHHHHHHHHHHHHHH                        HHHHH   HHHHHHHHHHH EEE         HHH      H
SS_SPIDER3:       HHH HHHH   HHHHHHHHHHHHHHHHHHHH          H H            HHHH   HHHHHHHHHH   EEE                 H
SS_PSSPRED:    HHHHHHHHHHH   HHHHHHHHHHHHHHHHHHH         HHHHHH             EE   HHHHHHHHHHHHEEEE                 H
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                                          
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD     DDDDDDD                                               
DO_IUPRED2A:                                                                                                       
REGION:            LLRRR                                                                                           
DISULFID:                                                                C                                        C
CARBOHYD:                                                               N                                    N     

                       10        20        30        40        50        60        70        80        90     
AA:            SSFIKRRKYIVEPLSKEEAEFPIAYSIVVHHKIEMLDRLLRAIYMPQNFYCIHVDTKSEDSYLAAVMGIASCFSNVFVASRLESVVYASWSRVQADLNCM 200
BenignSAV:                                                        V     C                                          
gnomAD_SAV:    C   E #     T R   V LL    T DN NV  V  V  V#CT   LCYV GNA CK   *  L  VT   GK   DN* DRAFFV   Q H NFSF 
Conservation:  0073113454013260451267476947563353355576835836583896858185211410651354375186645332415475472868795898
SS_PSIPRED:    HHHHHH         HHH     EEEEEE   HHHHHHHHHHHH    EEEEEE     HHHHHHHHHHHH    EEE    EE     HHHHHHHHHHH
SS_SPIDER3:    HHHHHH         H H     EEEEEE   HHHHHHHHHHH     EEEEEE     HHHHHHHHHHHHH   EEEE   E EEE   HH HHHHHHH
SS_PSSPRED:    HHHHHHH                EEEEEE   HHHHHHHHHHHH    EEEEEE     HHHHHHHHHHHHH   EEEEE   EEE   HHH HHHHHHH
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       
DISULFID:                                                        C                    C                          C 

                       10        20        30        40        50        60        70        80        90     
AA:            KDLYAMSANWKYLINLCGMDFPIKTNLEIVRKLKLLMGENNLETERMPSHKEERWKKRYEVVNGKLTNTGTVKMLPPLETPLFSGSAYFVVSREYVGYVL 300
gnomAD_SAV:      VC   T *       D#   #  T K        L      M KIL Y       W  FI     K   A I H  K S        M N K M    
Conservation:  2673111118394675994957475916561182141517347630310071084123513120141041108025612235448499354471651233
SS_PSIPRED:    HHHHH      EEEE          HHHHHHHHHH                   HHH EEEE  EE                EEE EEEEEEHHHHHHHH
SS_SPIDER3:    HHHH       EEEE     EE   HHHHHHHHHH       E            E EEEEE  EEEE   EE         E  EEEEEEEHHHHHHHH
SS_PSSPRED:    HHHHHH   HHHHHH          HHHHHHHHHHH             HHHHHHHH        E                  EEEEEEEEHHHHHHHH
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                              D  DDDD                                                  

                       10        20        30        40        50        60        70        80        90     
AA:            QNEKIQKLMEWAQDTYSPDEYLWATIQRIPEVPGSLPASHKYDLSDMQAVARFVKWQYFEGDVSKGAPYPPCDGVHVRSVCIFGAGDLNWMLRKHHLFAN 400
gnomAD_SAV:      K     # *      R   R        A L   #D R     N# G       P   D   ND L   YN   #H A VLRT   HRL CN R   S
Conservation:  1311321631913865598944996547231465315140454266315248467901138210134372181704362576693865165412264466
SS_PSIPRED:      HHHHHHHHHHHH    HHHHHHHHHH                    HHHHHHHHHH                EEEEEEEE  HHHHHHHHH     HH
SS_SPIDER3:      HHHHHHHHHH      HHHHHHHHH                   HHHHHHHHEHE                 EEE EEEE  HHHHHHHH     EE 
SS_PSSPRED:    H HHHHHHHHHHHH    HHHHHHHHHH                 HHHHHHHHHHH                 EEEEEEEEE  HHHHHHHHHHHHHHHH
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       
ACT_SITE:                         E                                                                                
DISULFID:                                                                             C        C                   

                       10        20        
AA:            KFDVDVDLFAIQCLDEHLRHKALETLKH 428
gnomAD_SAV:       A#  F  #R    YM    #QI   
Conservation:  6752126114325541253132200111
SS_PSIPRED:           HHHHHHHHHHHHHHHHHHH  
SS_SPIDER3:           HHHHHHHHHHHHHHH      
SS_PSSPRED:           HHHHHHHHHHHHHHHHHHHH 
DO_DISOPRED3:                          DDDD
DO_SPOTD:                             DDDDD
DO_IUPRED2A:                               
DISULFID:                  C