Q08174  PCDH1_HUMAN

Gene name: PCDH1   Description: Protocadherin-1

Length: 1060    GTS: 1.234e-06   GTS percentile: 0.325     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


PathogenicSAV: 1      BenignSAV: 4      gnomAD_SAV: 426      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MDSGAGGRRCPEAALLILGPPRMEHLRHSPGPGGQRLLLPSMLLALLLLLAPSPGHATRVVYKVPEEQPPNTLIGSLAADYGFPDVGHLYKLEVGAPYLR 100
BenignSAV:                   F         P                                                                           
gnomAD_SAV:    # NR   PL L   F       RKP K      V L     #      P T  S  T L M E L    H   T   TTNN            M  L  H
Conservation:  2222222222222222222222222222222222222011000201111111010212021422044343332344352324312134443552433476
STMI:          SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS                                           
SS_PSIPRED:               HHHHH      HHH        HHH HHHHHHHHHHHHH    HH                EEE HHHHH      EEEEEE     EE
SS_SPIDER3:            E HHHHH      HHHH              H HHHHHHHH          EEEE         EEE HHHH      EEEEEE     EEE
SS_PSSPRED:                HHHH                     HHHHHHHHHHHHH         EEE          EEEEHHHHH      EEEEEE    EEE
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                               
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                              
DO_IUPRED2A:   DDDDD                   DDDDDDDD                           DDDDD          D                         

                       10        20        30        40        50        60        70        80        90     
AA:            VDGKTGDIFTTETSIDREGLRECQNQLPGDPCILEFEVSITDLVQNGSPRLLEGQIEVQDINDNTPNFASPVITLAIPENTNIGSLFPIPLASDRDAGPN 200
PathogenicSAV:                  G                                                                                  
gnomAD_SAV:    MV    NV  SK  #NH #FC Y# H        K      E #  VI Q        R F     T TP  V V V      S     S    C  VA 
Conservation:  6531662535423436751423541113322845466585554232225383683535384887684933555163656451284253442836643316
SS_PSIPRED:    E     EEEE      HHHH            EEEEEEEEE         EEEEEEEEE            EEEEEE              EE       
SS_SPIDER3:    EE     EEE   EE HHHHH           EEEEEEEEE         EEEEEEEEEE       E   EEEEEE        EEE            
SS_PSSPRED:    EE     EEE      HHH HHH         EEEEEEEEE         EEEEEEEEEE            EEEEE                       
DO_DISOPRED3:                                                                D DDDDDD                              
DO_SPOTD:                                                                                                          
DO_IUPRED2A:           DDDD DDD  DDDDD                              DDDDDD DDD        D               DDDD  D   DDD

                       10        20        30        40        50        60        70        80        90     
AA:            GVASYELQAGPEAQELFGLQVAEDQEEKQPQLIVMGNLDRERWDSYDLTIKVQDGGSPPRASSALLRVTVLDTNDNAPKFERPSYEAELSENSPIGHSVI 300
gnomAD_SAV:      G    RPR   RK  R     N        F   TM H HR  C   V AR     S#T GT MHI  V S   T    Q     K   K    YLI 
Conservation:  5532625112123114838844331445399567362986824855552445289524452555586525372687294874229862418754293565
SS_PSIPRED:      EEEEE         EEEEEEE      EEEEE          EEEEEEEEEE       EEEEEEEEEE            EEEEEEE       EEE
SS_SPIDER3:     E EEEEEE      EEEEEEEE    E EEEEE E        EEEEEEEEEE     EE EEEEEEEEE       EE   EEEEEE        EEE
SS_PSSPRED:      EEEEEE       EEEEEE        HHHHH          EEEEEEEEEE        EEEEEEEEEE            EEEEEE       EEE
DO_DISOPRED3:                                                                             D                        
DO_SPOTD:                                                                                                          
DO_IUPRED2A:   DDDDDDDD       DDDDDDD     DDDDDDDD             DDDDDDD D D   DDDDDDD      DDDDDDDDDDDDDD DDD  DDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            QVKANDSDQGANAEIEYTFHQAPEVVRRLLRLDRNTGLITVQGPVDREDLSTLRFSVLAKDRGTNPKSARAQVVVTVKDMNDNAPTIEIRGIGLVTHQDG 400
gnomAD_SAV:     M           A K   PHT KG SHP Q E SN  T   #LMN# G    H P  T  QSISS NDH  M  IMN K   D     W          
Conservation:  8655272728275454634435242533473554258353734249895331659162979663345336526261649299839275996787426345
SS_PSIPRED:    EEEEEE      EEEEEEEE   HHHHHHEEE     EEEE          EEEEEEEEE        EEEEEEEEEE       EEEEEEE        
SS_SPIDER3:    EEE          EEEEEE    HHHH  EEE     EEEE  E       EEEEEEEEE       EEEEEEEEEEE        EEEEEEEEE     
SS_PSSPRED:    EEEEE       EEEEEEE    HHHHHHHH       EEEE          EEEEEEEE         EEEEEEEEEEE     EEEEEEE        
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:   DDDD D    DDDDDDDD                      DDDD           DDD   D      DDDDDDDD            D D         
CARBOHYD:          N                                                                                               

                       10        20        30        40        50        60        70        80        90     
AA:            MANISEDVAEETAVALVQVSDRDEGENAAVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYEKVKDYTIEIVAVDSGNPPLSSTNSLKVQVVDVN 500
gnomAD_SAV:       T  G S    L       Q    D            Y  HE RD              AL       N N     M     # F S   T     I 
Conservation:  3837394425357788879692967597386866759898584443621213678678576549979124561637966536484854466839682938
SS_PSIPRED:     EE         EEEEEEEEE       EEEEEE     EEEEE          EEEEEE          EEEEEEEEE        EEEEEEEEEE   
SS_SPIDER3:     EE         EEEEEEEE        EEEEEE     EEEEE          EEEEEE           EEEEEEEEE      E EEEEEEEEEE  
SS_PSSPRED:                EEEEEEEE       EEEEEEE      EEEE          EEEEE            EEEEEEEE           EEEEEEEEE 
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:     D DD        DDD D                        DDD    D DDD D                      DD   D  D DDDDD      
CARBOHYD:        N                                                                                                 

                       10        20        30        40        50        60        70        80        90     
AA:            DNAPVFTQSVTEVAFPENNKPGEVIAEITASDADSGSNAELVYSLEPEPAAKGLFTISPETGEIQVKTSLDREQRESYELKVVAADRGSPSLQGTATVLV 600
BenignSAV:                  T                                                                                      
gnomAD_SAV:      T     T S*FT L    SD M V V      F          Q#DLDG        K      # P  W  WD #K Q     Q         #I L
Conservation:  9749293321257172947044426225192978583854528372122121429283224936262128999225385718293979152349563755
SS_PSIPRED:             EEEEEEE       EEEEEEEE       EEEEEE          EEE     EEEE     HHH  EEEEEEEEE       EEEEEEEE
SS_SPIDER3:         E   EEEEEEE       EEEEEEEE      EEEEEEEE       EEEEEE    EEEEE    H  EEEEEEEEEEEE     EE EEEEEE
SS_PSSPRED:             EEEEEEE       EEEEEEEE        EEEEE        EEEE      EEEEE    HHHHHHHHEEEEEEE        EEEEEE
DO_DISOPRED3:  DDDD D                                                                                              
DO_SPOTD:                                                                                                          
DO_IUPRED2A:          DDDDDDD  D   DD DDDDDDDD     DDDDDDDD        DDDDD       DDDDDDD     DDDDDDDDD               

                       10        20        30        40        50        60        70        80        90     
AA:            NVLDCNDNDPKFMLSGYNFSVMENMPALSPVGMVTVIDGDKGENAQVQLSVEQDNGDFVIQNGTGTILSSLSFDREQQSTYTFQLKAVDGGVPPRSAYVG 700
BenignSAV:     K                                                                                                   
gnomAD_SAV:    K       N   I N   L  I    G N L T         D   M#  A    SE #V              Q    S    M      IL  LT AD
Conservation:  2819399839695732659762984344788967992919361971428376111329375848689493368768234384945685949275576564
SS_PSIPRED:    EEE       EE                  EEEEEEEE     EEEEEEEE      EEE     EEEE     HH   EEEEEEEEEE      EEEEE
SS_SPIDER3:    EEE       EEEE    EEEE        EEEEEEEE     EEEEEEEEE     EEEE    EEEEEEE  H    EEEEEEEEEE  E  EEEEEE
SS_PSSPRED:    EEE                            EEEEEEE       EEEEEEE      EEE    EEEE          EEEEEEEEEE       EEEE
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                   DD D       DDDDDD                                  DDD              
CARBOHYD:                       N                                           N                                      

                       10        20        30        40        50        60        70        80        90     
AA:            VTINVLDENDNAPYITAPSNTSHKLLTPQTRLGETVSQVAAEDFDSGVNAELIYSIAGGNPYGLFQIGSHSGAITLEKEIERRHHGLHRLVVKVSDRGKP 800
gnomAD_SAV:               T F#           NS  C  DM   MV K   T    K     E    C     E L        K  WC Y         N #  L
Conservation:  5353768698939273191816522514141234181190929192819658072737988518928320393737333423782999968739492928
SS_PSIPRED:    EEEEEE       EE                   EEEEEEEEE      EEEEEEE        EEE     EEEE           EEEEEEEE     
SS_SPIDER3:    EEEEEE       EEE                  EEEEEEEE      EEEEEEEEEE     EEEE     EEEEE       E E EEEEEEEE  E 
SS_PSSPRED:    EEEEEEE                          EEEEEEEEEE      EEEEEEE         EEE     EEEHHHHHHHHH   EEEEEEE     
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:     D        DDDDDDDDDD DDDDDDDD  D   D                                                     DD        

                       10        20        30        40        50        60        70        80        90     
AA:            PRYGTALVHLYVNETLANRTLLETLLGHSLDTPLDIDIAGDPEYERSKQRGNILFGVVAGVVAVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPK 900
gnomAD_SAV:     HCV  S     S S   CKV  N       M    V       K#   C   F         M# F #VV   H    Q  E#        IN  CTR 
Conservation:  3425455685779772381716526524650456128889683422225345635855594349435844743584313422648875988735865473
STMI:                                                              MMMMMMMMMMMMMMMMMMMMM                           
SS_PSIPRED:      EEEEEEEEEEE     HHHHHHHH                  HHHH  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH                  
SS_SPIDER3:      EEEEEEEEEEE     HHHHHHH                  H H  HHHHHHHHHHHHHHHHHHHHHHHHHHHHH         E             
SS_PSSPRED:        EEEEEEEEEE    HHHHHHHHHH                       EEHHHHHHHHHHHHHHHHHHHHHHHHH                      
DO_DISOPRED3:                             DDDDDDDDDDDDDDDDDDDD           DDDDDDDDDDDDDD D  DDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:                                                                                      DDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:                                           DD                                         DDDDDDDDDDDDDDDDD
CARBOHYD:                  N    N                                                                                  

                       10        20        30        40        50        60        70        80        90     
AA:            PSGKASKGNKSKGKKSKSPKPVKPVEDEDEAGLQKSLKFNLMSDAPGDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPPA 1000
gnomAD_SAV:     GS      RN #  #  S L#    NKN  R  E    S IRNSA    H   H    S I N  H  L   L                  M     S 
Conservation:  3225422524372643523433433456224444332254332523334634323433365595566997866877464856578434488767657543
SS_PSIPRED:                                         EEEEE                      HHH          EE            EEEEE    
SS_SPIDER3:                                         EEEE E                                  EE            EEEEE    
SS_PSSPRED:                                        EEEEE                                                           
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD   DDDD   D                       D D  DDDDDDDDDDDDDDDDDDDDD         
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                                                  
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
MODRES_P:                       S                              S            S                     S                

                       10        20        30        40        50        60
AA:            NTFVGTGDTTSTGSEQYSDYSYRTNPPKYPSKQVGQPFQLSTPQPLPHPYHGAIWTEVWE 1060
gnomAD_SAV:       M  R  M MD  L  N NCCAD L   N       H  IL    DL  RV * D   
Conservation:  657563663373535334343321221442242242222334222241222202123222
SS_PSIPRED:      EE          HH                     EEEE            EEEEE  
SS_SPIDER3:      EEEE                E               EEE             EEEE  
SS_PSSPRED:      EEE                                EEE             EEEEEE 
DO_DISOPRED3:         DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD D
DO_SPOTD:                  DD                                              
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD   D