Q2UY09  COSA1_HUMAN

Gene name: COL28A1   Description: Collagen alpha-1(XXVIII) chain

Length: 1125    GTS: 2.131e-06   GTS percentile: 0.698     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


      BenignSAV: 8      gnomAD_SAV: 703      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MWNRYFVFYLLLLSAFTSQTVSGQRKKGPKSNLLARKSDVQGSICFIDIVFIVDSSESSKIALFDKQKDFVDSLSDKIFQLTPGRSLEYDIKLAALQFSS 100
gnomAD_SAV:    T     I H M   V MN   YR   #EL   SPV  N IR CT  T #F  MET G F  T  N       RFNENT    # #Y D NM  ## *   
Conservation:  1111110111221111000010333121001101100110110181444375475773620025216717501332241021201221312635357686
STMI:          SSSSSSSSSSSSSSSSSSSSSSS                                                                             
SS_PSIPRED:      HHHHHHHHHHHHHHHHHHHH                     EEEEEEEEEEE      HHHHHHHHHHHHHHHHHHHH      HHEEEEEEEEE   
SS_SPIDER3:        HHHHHHHHHHHH                     E     EEEEEEEEEEE     HHHHHHHHHHHHHHHHHHHH        HEEEEEEEEEE  
SS_PSSPRED:       EHHHHHHHHHHHHH                          EEEEEEEEEEE      HH HHHHHHHHHHHHHHHH        HHHHHHHHHH   
DO_DISOPRED3:  BBBBBBDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD     D      DD                                               
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                                           
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            SVQIDPPFSSWKDLQTFKQKVKSMNLIGQGTFSYYAISNATRLLKREGRKDGVKVVLLMTDGIDHPKNPDVQSISEDARISGISFITIALSTVVNEAKLR 200
BenignSAV:                                                                                             G           
gnomAD_SAV:     GLV   SP      I *   T#   TRRV L FH  FH  GV    WH HAE M  MI  V NRS       VF #V   ET  S L# YMI  DV PH
Conservation:  3613323712834211941241141457575533566363524512740024464336435612673653311332155124614545445101101282
SS_PSIPRED:                 HHHHHHHHH          EEE   HHHHHHHH        EEEEEE          HHHHHHHHHH   EEEEEE      HHH  
SS_SPIDER3:    EEEE         HHHHHHHE    E       EE EE EHHE          EEEEEE             HHHHH      EEEEEE           
SS_PSSPRED:      E          HHHHHHHHH        EEEEEEHHHHHHHHH        EEEEEEE             HHHHHHH   EEEEEE      HHHH 
DO_DISOPRED3:                                                              D DD   D  D                         DDDD
DO_SPOTD:                                                                           DDDDDDDDDDDDD            DDDDDD
DO_IUPRED2A:                                                                     DDDDDDDD                          

                       10        20        30        40        50        60        70        80        90     
AA:            LISGDSSSEPTLLLSDPTLVDKIQDRLDILFEKKCERKICECEKGDPGDPGPPGTHGNPGIKGERGPKGNPGNAQKGEAGERGPGGIPGYKGDKGERGEC 300
BenignSAV:                                           V                                                             
gnomAD_SAV:    FS  N  GG S    NLPVA   E H      R#Y S VYKYG E # GSELSS Y  R MEVK* R RSLD G#N D   G     R # S  V CR R
Conservation:  1554243112333514113123311341132111511115074572361261272282291281292890294112914912912713814623821734
SS_PSIPRED:                         HHH   HHH                                                                      
SS_SPIDER3:    E                 HHHH                                                                              
SS_PSSPRED:                           HHHHHH                                                                       
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      D  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   D      D   DDDDDDD                      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            GKPGIKGDKGSPGPYGPKGPRGIQGITGPPGDPGPKGFQGNKGEPGPPGPYGSPGAPGIGQQGIKGERGQEGRPGAPGPIGVGEPGQPGPRGPEGVPGER 400
BenignSAV:                               S                                                                         
gnomAD_SAV:    S SET SH VP  SH Q   SV    S    AQ    Y   M K  ASAH#      E V#  T    VR   L  AE#T  RK#R S AC     Q VS
Conservation:  6136035219117419129136136118119308339118168338217227328215481571773280283283273261543722731831623722
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            GLPGEGFPGPKGEKGSEGPTGPQGLQGLSIKGEKGDIGPVGPQGPMGIPGIGSQGEQGIQGPIGPPGPQGPAGQGLPGSKGEVGQMGPTGPRGPVGIGVQ 500
BenignSAV:                                     D   M                                  P                            
gnomAD_SAV:       V  L  S   R     A       PL # K # M   R    #V TE E H  LRME  VA LRT  LTV#    FE   S V R DS*ETL TEG 
Conservation:  8116362371795582172191292271315865731711912831813815168357128318226247115161262772171172171272251623
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            GPKGEPGSIGLPGQPGVPGEDGAAGKKGEAGLPGARGPEGPPGKGQPGPKGDEGKKGSKGNQGQRGLPGPEGPKGEPGIMGPFGMPGTSIPGPPGPKGDR 600
gnomAD_SAV:    DS# *#S TR L KL   E     VRT KSE L T  A #LS   * VSR# K T  I R  ER  ##  K #  DLV ID   IA  * SAS## NVGG
Conservation:  5158329107129027138228128286618126247346136361272584281471272161071173163684481171181272342422936951
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            GGPGIPGFKGEPGLSIRGPKGVQGPRGPVGAPGLKGDGYPGVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRGVGTQGPKGDTGQKGLPGP 700
gnomAD_SAV:     A  VTV#     HP QE#T# H #GRR   L   S  SSRAH LC   #TS     H       N    #G   SL RRQ#IE  E  #VIR  VFH  
Conservation:  9109228228238133174482281273172181455512821934823921951632617247369529129229428428151183381293172292
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            PGPPGYGSQGIKGEQGPQGFPGPKGTMGHGLPGQKGEHGERGDVGKKGDKGEIGEPGSPGKQGLQGPKGDLGLTKEEIIKLITEICGCGPKCKETPLELV 800
BenignSAV:                                             Q                                                           
gnomAD_SAV:     A A C  *   W ER  A  DL S I ##F  HER YR WDNER       V K E AR  S * L    RVRE *SF     TYDYR   E  LI   
Conservation:  1933916349168518137127358118173382683270183181561291191280291190071583165454465256134646311731246665
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                      H                 
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DDDDD DDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD  D               
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                             

                       10        20        30        40        50        60        70        80        90     
AA:            FVIDSSESVGPENFQIIKNFVKTMADRVALDLATARIGIINYSHKVEKVANLKQFSSKDDFKLAVDNMQYLGEGTYTATALQAANDMFEDARPGVKKVAL 900
BenignSAV:                                                                                      L                  
gnomAD_SAV:      MN   NL#   SP    # N VV W VVV  M C  T D       #   NH    NY #F#MNS #   * R*A P# L  SN    GS   TI   
Conservation:  8566555548637613483773233533323023455756465312022124021122314413641517366664754852162138115414536654
SS_PSIPRED:                           HHHHHH  HHH  EEE    HHHHHH        HHHHHHHHHH            HHHHH    HH       EEE
SS_SPIDER3:                 H HHHHHHHHHHHH                HHHHHH        HHHHHHHHH           HHHHHHH HHHHH     EEEEE
SS_PSSPRED:                             HHH         E       HHH         HHHHHHHHHH         H HHHHHHHH          EEEE
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                            
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            VITDGQTDSRDKEKLTEVVKNASDTNVEIFVIGVVKKNDPNFEIFHKEMNLIATDPEHVYQFDDFFTLQDTLKQKLFQKICEDFDSYLVQIFGSSSPQPG 1000
gnomAD_SAV:     MN  #  CLN # V   AE    I#MKTLA EM N   ADL V  E RH   I   Y D* YY  SM      E L  N  V  FC IHS V L #LLE
Conservation:  5356454604701252035124311357354555331243030161175224653538342424612611242126323264101101100011110010
SS_PSIPRED:    E               HHHH       EEEEEEEEE     HHHHHHHH  HH     EEEE      HHHHHHHHHHHHHH                  
SS_SPIDER3:    EE          HH HHHEE      EEEEEEEEEE     HHHHHHHHHHH       EEEE    HHHHHHHHHH  EEE     E            
SS_PSSPRED:    EE            HHHHHHH     EEEEEEEEEE      HHHHHHHHHH      EEEEE    HHHHHHHHHHHHHHHH                 
DO_DISOPRED3:                                         D BBBBDDDDD                                             DDDDD
DO_SPOTD:                                                                                                     DDDDD
DO_IUPRED2A:              DDDDDDD                             D                                                  DD

                       10        20        30        40        50        60        70        80        90     
AA:            FGMSGEELSESTPEPQKEISESLSVTRDQDEDDKAPEPTWADDLPATTSSEATTTPRPLLSTPVDGAEDPRCLEALKPGNCGEYVVRWYYDKQVNSCARF 1100
gnomAD_SAV:     #L R  V  A S TE             YDEN S  SM*V G  T I  Q  N# KTQV ILM ES VR Y  G R E Y   # * C  E F  Y # 
Conservation:  0000000000000010000000000000000000000000010001011010010010000111111121250204125241141324553113434444
SS_PSIPRED:                          EEE                                                          EEEEEEEE      EEE
SS_SPIDER3:                                                                             EE       H EEEEEE     EEEEE
SS_PSSPRED:                                                                                       EEEEEEE      EE E
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                               
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                               
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD   D  D                           
DISULFID:                                                                             C        C               C   

                       10        20     
AA:            WFSGCNGSGNRFNSEKECQETCIQG 1125
gnomAD_SAV:      #   #  I LDI     D #TL 
Conservation:  6456516316352241151124211
SS_PSIPRED:    EEE           HHHHHHHH   
SS_SPIDER3:    EEE           HHHHHHH    
SS_PSSPRED:    EEE           HHHHHHHH   
DO_DISOPRED3:                           
DO_SPOTD:                               
DO_IUPRED2A:                            
DISULFID:          C            C   C