Q5JUK3  KCNT1_HUMAN

Gene name: KCNT1   Description: Potassium channel subfamily T member 1

Length: 1230    GTS: 2.077e-06   GTS percentile: 0.681     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


PathogenicSAV: 42      BenignSAV: 42      gnomAD_SAV: 524      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MARAKLPRSPSEGKAGPGGAPAGAAAPEEPHGLSPLLPARGGGSVGSDVGQRLPVEDFSLDSSLSQVQVEFYVNENTFKERLKLFFIKNQRSSLRIRLFN 100
gnomAD_SAV:                                                           *     F    I M  CA    L  Q E    R    N  MQ LS
Conservation:  2222222222222222222222222222222222222222222222220222222222222000024253343122232323242324124245433332
STMI:                                                                                                           MMM
SS_PSIPRED:                                                                      EEEEEEE    HHHHHHHHHH     HHHHHHHH
SS_SPIDER3:                                                          H           EEEEEEE    HHHHHHHHHH    H HHHHHHH
SS_PSSPRED:                                                                      EEEEEEE    HHHHHHHHHHH    HHHHHHHH
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD   DD                                               
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                                    
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                                              

                       10        20        30        40        50        60        70        80        90     
AA:            FSLKLLTCLLYIVRVLLDDPALGIGCWGCPKQNYSFNDSSSEINWAPILWVERKMTLWAIQVIVAIISFLETMLLIYLSYKGNIWEQIFRVSFVLEMINT 200
BenignSAV:                                                               V                              C          
gnomAD_SAV:        V S  F TMHI  E LS   R      * H  S L  K S #L      QI V V    M  M  P R   VH T  C V  *  CM  I  I#  
Conservation:  4343225524442363321310022222402122102200114260143752411244223623423343332533465545543454343353553344
STMI:          MMMMMMMMMMMMMMMMMM                                     MMMMMMMMMMMMMMMMMMMMM           MMMMMMMMMMMMM
SS_PSIPRED:    HHHHHHHHHHHHHHHHH                          EEEEEEE     HHHHHHHHHHHHHHHHHHHHHHHHH   HHHHHH HHHHHHHHHH
SS_SPIDER3:    HHHHHHHHHHHHHHHH         EEE               EEEEEEEE   HHHHHHHHHHHHHHHHHHHHHHHHH    HHHHHHHHHHHHHHHHH
SS_PSSPRED:    HHHHHHHHHHHHHHHH                             EEEEEE    HHHHHHHHHHHHHHHHHHHHHHHHH  HHHHHHHHHHHHHHHHHH
DO_DISOPRED3:      D  D                                                                                            
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       
CARBOHYD:                                      N   N                                                               

                       10        20        30        40        50        60        70        80        90     
AA:            LPFIITIFWPPLRNLFIPVFLNCWLAKHALENMINDFHRAILRTQSAMFNQVLILFCTLLCLVFTGTCGIQHLERAGENLSLLTSFYFCIVTFSTVGYGD 300
PathogenicSAV:                                           Q       EF         I      S                               
BenignSAV:                                                                     M                                   
gnomAD_SAV:    V    M LC#      NRI     PV  T Q L     HV PW * V     #V        I M         WV KD      S   VI    M    
Conservation:  2953454330356357787888899883588644684666645645646566434445547636854865556564823544534358856668667496
STMI:          MMMMMMMM     MMMMMMMMMMMMM                         MMMMMMMMMMMMMMMMMMMMM         IIIIIIIIIIIIIIIIIII
SS_PSIPRED:    HHHHHHHH  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH  HHHHHHH      HHHHHHHHHHHHH      
SS_SPIDER3:    HHHHHHH   HHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH   EHHHEEE      HHHHHHHHHHHH       
SS_PSSPRED:    HHHHHHHH    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH    EEHHH       HHHHHHHHHHHH       
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            VTPKIWPSQLLVVIMICVALVVLPLQFEELVYLWMERQKSGGNYSRHRAQTEKHVVLCVSSLKIDLLMDFLNEFYAHPRLQDYYVVILCPTEMDVQVRRV 400
PathogenicSAV:                    R      L       R                                           Q          L          
gnomAD_SAV:    I    #LLH      F  V L      K  I  #  #E       C #S MD R  P   F   NFF    DK     W   H MIL * MD     #  
Conservation:  5492444555775467364443664535543596565554883455364465663559865544666586777666552573555555664626135545
STMI:          II  MMMMMMMMMMMMMMMMMMMMM                                                                           
SS_PSIPRED:         HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH       EEEE     EEEEEE    HHHHHHHHHHHHH       EEEEEE     HHHHHH
SS_SPIDER3:          HHHHHHHHHHHHHHH  HHHHHHHHHHHHH        EEEE    EEEEEE     HHHHHHHHHHH         EEEEEE     HHHHHH
SS_PSSPRED:          HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH               EEEEEE    HHHHHHHHHHHH       EEEEEE      HHHHHH
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            LQIPLWSQRVIYLQGSALKDQDLMRAKMDNGEACFILSSRNEVDRTAADHQTILRAWAVKDFAPNCPLYVQILKPENKFHVKFADHVVCEEECKYAMLAL 500
PathogenicSAV:         Q        F                               L    # RT                     R                V   
BenignSAV:                     T                                 R                                                 
gnomAD_SAV:            W N          E T  Q  S           A   M   QRA   T  M  VTTS    I     Q    I  V       A      V 
Conservation:  8356776499767777566657936665435365556547342352455666777677577977365766779767679766843556565643444554
SS_PSIPRED:    H   HHH EEEEEE     HHHHHHH     EEEEEE         HHHHHHHHHHHHHHHH     EEEEEE HHHHHHH    EEEEHHHHHHHHHHH
SS_SPIDER3:    H       EEEEEE     HHHHHH    EEEEEEEE       HHHHHHHHHHHHHHHHHH     EEEEEE H HHHHHHH  EEEEHHHHHHHHHHH
SS_PSSPRED:    HH     EEEEEEE     HHHHHHH      EEEEE        HHHHHHHHHHHHHHHHH     EEEEEE HHHHHHH    EEEEHHHHHHHHHHH
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            NCICPATSTLITLLVHTSRGQEGQESPEQWQRMYGRCSGNEVYHIRMGDSKFFREYEGKSFTYAAFHAHKKYGVCLIGLKREDNKSILLNPGPRHILAAS 600
PathogenicSAV:                                   E                                                                 
BenignSAV:                                                    V                   T                                
gnomAD_SAV:        L S           #S K K  A    #   C* V K *Y H VGN  LH  KSE  I     T  R  M F R  Q  K NV   L SQ V  T 
Conservation:  3546633343425535353335421544365436534455564351315625526626557434575445647454252322222232136643324232
SS_PSIPRED:    H    HHHHHHHHHHH           HHHHHHHHHH   EEEEEE       HHH    HHHHHHHHHHHH EEEEEEEE    EEEE     EEEE  
SS_SPIDER3:         HHHHHHHHHHH H        HHHHHHHHH     EEEEEE       HH    EHHHHHHHHHHHH EEEEEEE     EEEE      EEE  
SS_PSSPRED:    HH    HHHHHHHHHH          HHHHHHHHHHHH  EEEEEE      HHHH    HHHHHHHHHHHH  EEEEE      EEEE     EEE   
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                        D  DD   DD                                                                     

                       10        20        30        40        50        60        70        80        90     
AA:            DTCFYINITKEENSAFIFKQEEKRKKRAFSGQGLHEGPARLPVHSIIASMGTVAMDLQGTEHRPTQSGGGGGGSKLALPTENGSGSRRPSIAPVLELADS 700
PathogenicSAV:          #                                                                                          
BenignSAV:                                  L R   Q       R                G   M           V     S                 
gnomAD_SAV:     I  S #V  *  L      K TQ RKV L RVP KDLVCP L   F#FV            QHM* SS D S         SL  W           N 
Conservation:  6364445535573524212321001321001010212242653233553375564534342223122222222225245221111145445347443242
SS_PSIPRED:     EEEEEE  HHHHHHHHH  HHHHH                  HHHHH    HHHH                                     HHH    
SS_SPIDER3:     EEEEEE      HHHHHHHHHHH                  EEE EE    E E                                      HHH    
SS_PSSPRED:     EEEEE   HHHHHHHHHHHHHHHHHHHH               HHHH     EE                                       HHH   
DO_DISOPRED3:               DDD DDDDDDDDDDD DD             DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:                                                                DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:                   D          DDDDDDDD                     DDDDDDDDDDDDDDDDDDDDDDDDDDDD DDDDDDD        

                       10        20        30        40        50        60        70        80        90     
AA:            SALLPCDLLSDQSEDEVTPSDDEGLSVVEYVKGYPPNSPYIGSSPTLCHLLPVKAPFCCLRLDKGCKHNSYEDAKAYGFKNKLIIVSAETAGNGLYNFIV 800
PathogenicSAV:                                         #                    V              H                       
BenignSAV:                      M  EG    M                                                                         
gnomAD_SAV:         S       D  MM  E#K   M    N C  SLR  S F  P  V    DA    Q      Y         R      VIL  M S R     M
Conservation:  2123334443544454223133210100143486644586888654586843173439865865282911286664735455566665825897578855
SS_PSIPRED:                               EEE                HHH                     HHHHHHH     EEEEE  HHHHHHHHHHH
SS_SPIDER3:                                E                 HHH        E            HHHHHH     EEEEEE     HHHHHHHH
SS_PSSPRED:                                                HHHHHH       HHH          HHHHHHH    EEEEEE    HHHHHHHHH
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD             DDDDDDDDDD                                  
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDD                                                                         
DO_IUPRED2A:               DDDDDDDDDDD    DD                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            PLRAYYRSRKELNPIVLLLDNKPDHHFLEAICCFPMVYYMEGSVDNLDSLLQCGIIYADNLVVVDKESTMSAEEDYMADAKTIVNVQTMFRLFPSLSITT 900
PathogenicSAV:                                                                          #  #         R             
BenignSAV:                            N    G                                                             Q         
gnomAD_SAV:    L  S  T #   K VM       N    G  R   V      A    G  P YSV  V     A E    ITK N   YT   D M    Q         
Conservation:  8687458345484856688641751257557435744464354444654465584355424565568445463656566555565334344855363545
SS_PSIPRED:    HHHHH         EEEEE     HHHHHHHH    EEEEE     HHHHHHH  EE  EEEEE          HHH  HHHHHHHHHHHHH     EEE
SS_SPIDER3:    HHHH          EEEEE     HHHHHHHH    EEEEE     HHHHHHH      EEEEE                   HHHHHHHHH      EE
SS_PSSPRED:    HHHHHH        EEEE      HHHHHHHHH   EEEEE     HHHHHHH HHH  EEEEEE         HHHH      HHHHHHH       EE
DO_DISOPRED3:                                                                     DDDDDDDDDDDDD                    
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            ELTHPSNMRFMQFRAKDSYSLALSKLEKRERENGSNLAFMFRLPFAAGRVFSISMLDTLLYQSFVKDYMITITRLLLGLDTTPGSGYLCAMKITEGDLWI 1000
PathogenicSAV:         C    HT       F    E  L               T               P                                     
BenignSAV:                                                                                      A                  
gnomAD_SAV:           VC    C R     GP     K *      S T   #    C  N  VV AV  E  M   V  VIW      IA            K N   
Conservation:  5544654556435345323422342545356336446465644653455445444445554634343233143345456332743635424242424563
SS_PSIPRED:    EE                  HHHHHHHHHHHH      HH  HHHH   EEEHHHHHHHHHHHH    HHHHHHHHH          HH     HHHH  
SS_SPIDER3:    EE    HHHHHHH     H HHHHHHHHHHHH      HEE  HH      EHHHHHHHHHHH     HHHHHHHHH          EEEEE  H H   
SS_PSSPRED:    E                 HHHHHHHHHHHHHHH   HHHHH HHHH  EEEEHHHHHHHHHHH   HHHHHHHHHHH          EEEE   HHHH  
DO_DISOPRED3:                       DDDD                                                                           
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            RTYGRLFQKLCSSSAEIPIGIYRTESHVFSTSESQISVNVEDCEDTREVKGPWGSRAGTGGSSQGRHTGGGDPAEHPLLRRKSLQWARRLSRKAPKQAGR 1100
PathogenicSAV:                                                                                       D             
BenignSAV:                                                          V  T   D    #      S      Q       W            
gnomAD_SAV:    HR SH    F F  TK    F QIDN I  IL C VW KM  Y   Q #    V CV IR   * C MDSSNLT# TV QCE  E  Q  NHRVS R #W
Conservation:  2455564422544243463765543241212223413232321142130112222220110022131122221111233423433634244232131112
SS_PSIPRED:      HHHHHHHHHH    EEEEEEE             EEEHHH                                      HHHHHHHHHHH         
SS_SPIDER3:     EHHHHHHHHHH    EEEEEE              EE                                         HHHHHHHHHHH     HH  H
SS_PSSPRED:      HHHHHHHHHHHH  EEEEEE                                                          HHHHHHHHHHHH       H
DO_DISOPRED3:                                DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:                                   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:                                           DD      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD          D    D     

                       10        20        30        40        50        60        70        80        90     
AA:            AAAAEWISQQRLSLYRRSERQELSELVKNRMKHLGLPTTGYEDVANLTASDVMNRVNLGYLQDEMNDHQNTLSYVLINPPPDTRLEPSDIVYLIRSDPLA 1200
BenignSAV:     VV T               H       R                                        R       L                       
gnomAD_SAV:    VTV#  LG EH G C# C H# F K  QS       L  S KN#   A   GI        * K    #K F  I L  LS#A  KAR T    S ##  
Conservation:  3222221333411322456645623533264326452313322222222222222222222243223112334327436223313132224454534433
SS_PSIPRED:    HHHHHHHHHH HHH  HHHHHHHHHHHHHHHHH               HHHHH                 EEEEEEE            EEEEEE  HHH
SS_SPIDER3:    HHHHHHHH HHHH H H HHHHHHHHHHHHHHH               HHHHHH                 EEEEEE            EEEEEE  HHH
SS_PSSPRED:    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH                                      EEEEEE            EEEEEE     
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDD DDDD    D DDDDDDDDDDDDDDDDDDDDD  DDDBB                                        D
DO_SPOTD:      DD                                                                                                  
DO_IUPRED2A:   D                     D DDDDDDDDDDDDDDDDDD  DDD          DDDDDDD      DDDDDDDDDD      DDD           

                       10        20        30
AA:            HVASSSQSRKSSCSHKLSSCNPETRDETQL 1230
BenignSAV:       T              L    KA      
gnomAD_SAV:    YM   CR Q  RY#QQ LF  SKAHNKP  
Conservation:  122111111112000001222011111110
SS_PSIPRED:    H                             
SS_SPIDER3:    H                             
SS_PSSPRED:                                  
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:        DDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:      DDDDDD DDDDDDDDDDDDDDDDDDDD