Q5ST30  SYVM_HUMAN

Gene name: VARS2   Description: Valine--tRNA ligase, mitochondrial

Length: 1063    GTS: 1.679e-06   GTS percentile: 0.527     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


PathogenicSAV: 8      BenignSAV: 13      gnomAD_SAV: 458      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MPHLPLASFRPPFWGLRHSRGLPRFHSVSTQSEPHGSPISRRNREAKQKRLREKQATLEAEIAGESKSPAESIKAWRPKELVLYEIPTKPGEKKDVSGPL 100
BenignSAV:                              Y                                     R                                    
gnomAD_SAV:    T #    Y *  L V  L L     YPI     ANECSV W     EE  Q  T   PK AT E        V  RGL D A C   A  VG  N   SV
Conservation:  1001010101111121201121000011101110012011142233224542232222011111101010101112113113151124015144221111
STMI:          TTTTTTTTTTTTTTTTTTTTTTTTTT                                                                          
SS_PSIPRED:                                            HHHHHHHHHHHHHHHHHHHHHHHH     HHHH     HH                    
SS_SPIDER3:                                            HHHHHHHHHHHHHHHHHHHHH                      E          E     
SS_PSSPRED:                                            HHHHHHHHHHHHHHHHHHHHHHH                                     
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                      
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD     DDDDDDDDD      
DO_IUPRED2A:   DD                      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD   DD                     DDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            PPAYSPRYVEAAWYPWWVREGFFKPEYQARLPQATGETFSMCIPPPNVTGSLHIGHALTVAIQDALVRWHRMRGDQVLWVPGSDHAGIATQAVVEKQLWK 200
PathogenicSAV:                                                                       W                             
BenignSAV:                                             I                                                           
gnomAD_SAV:    LSV  LQ   D  F             R Q      GN  TYM H     P    QT  MG *   MCS W C    P  SCA N   S    ED   C 
Conservation:  2122241266113312421152326513001211112142322444433324323443434545222532561811454166243444435254762501
SS_PSIPRED:         HHHHHHHHHHHHHH                   EEEE           HHHHHHHHHHHHHHHHHH     EEE        HHHHHHHHHHHHH
SS_SPIDER3:         HHHHHHHHHHHHHH                   EEEE        HHHHHHHHHHHHHHHHHHHHH     EEE     HHHHHHHHHHHHHHHH
SS_PSSPRED:         HHHHHHHHHHHHHHH                  EEEE          HHHHHHHHHHHHHHHHHHH     EEE       HHHHHHHHHHHHHH
DO_DISOPRED3:                                                                                                  D   
DO_SPOTD:                                                                                                          
DO_IUPRED2A:   D                                      DDD                                                          
MOTIF:                                                      PNVTGSLHIGH                                            

                       10        20        30        40        50        60        70        80        90     
AA:            ERGVRRHELSREAFLREVWQWKEAKGGEICEQLRALGASLDWDRECFTMDVGSSVAVTEAFVRLYKAGLLYRNHQLVNWSCALRSAISDIEVENRPLPGH 300
BenignSAV:       R                                                                                                 
gnomAD_SAV:    QWV K R# NWVGC    C    V  R F G  *    P N  # R      PL T   VS W F V    WD E     Y    V L   M  WR   R
Conservation:  1211162533521441344175223632421763147353242422444401240561436424321335453123434241513334524321124041
SS_PSIPRED:    HH   HHH  HHHHHHHHHHHHHHH HHHHHHHHH          HH       HHHHHHHHHHHH   EE              HHH EEEEE      
SS_SPIDER3:    H    HHH  HHHHHHHHHHHHHHH  HHHHHHHH          EEE  H HHHHHHHHHHHHHH         EEE            EEEEEE    
SS_PSSPRED:    HH   HHHH HHHHHHHHHHHHHHHHHHHHHHHHHH                 HHHHHHHHHHHHHH  EEE   EE  HHHHH  HHHH          
DO_DISOPRED3:                                                                                            D         
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            TQLRLPGCPTPVSFGLLFSVAFPVDGEPDAEVVVGTTRPETLPGDVAVAVHPDDSRYTHLHGRQLRHPLMGQPLPLITDYAVQPHVGTGAVKVTPAHSPA 400
PathogenicSAV:                                     I           T    N                                              
gnomAD_SAV:       *      L Y     YF   M       IM   I   MPLE     I  ANL#  R QRQ  C   I    L    C       METM    V NST
Conservation:  4151445210252671322425232401312314344435343652452433141642131620312321220444415014311274635635544601
SS_PSIPRED:               EE  EEEEEEEEE      EEEEEE         EEEEE    HHHHHH   EEE         EE              EE     HH
SS_SPIDER3:     E E       EEEEEEEEEEEE       EEEEEE         EEEEE    HHHH     EEE      EE EE             EEE     HH
SS_PSSPRED:     EE           EEEEEEEEE       EEEEE          EEEEE    HHH  HHH EEE         EEE          EEEEE     HH
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:   DDD                          DDDDDDDDD     DDDDDD           DDD                           DDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            DAEMGARHGLSPLNVIAEDGTMTSLCGDWLQGLHRFVAREKIMSVLSEWGLFRGLQNHPMVLPICSRSGDVIEYLLKNQWFVRCQEMGARAAKAVESGAL 500
PathogenicSAV:                                                                   #                                 
BenignSAV:                                                     R                                                   
gnomAD_SAV:         T*    L              RN   V  #   Q       N R#  W H D L      GC   MTQ     #   C  K R     SGGL SR
Conservation:  7113311213102244212503111321441522761351033025131223220122132423512333337244326854221135115223421312
SS_PSIPRED:    HHHHHHH      EEE           HHH    HHHHHHHHHHHHHH                      EEEE      EE  HHHHHHHHHHHH    
SS_SPIDER3:    HHHHHHHH    EEEE     E     HHH    HHHHHHHHHHHHHH   E EEE   EE  E      EEEE      EH  HHHHHHHHHHHH    
SS_PSSPRED:    HHHHHHHH     EEE           HHH    HHHHHHHHHHHHHHH                     EEE     HH HHHHHHHHHHHHHHHH  E
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:   DDDDD                                                                                               

                       10        20        30        40        50        60        70        80        90     
AA:            ELSPSFHQKNWQHWFSHIGDWCVSRQLWWGHQIPAYLVVEDHAQGEEDCWVVGRSEAEAREVAAELTGRPGAELTLERDPDVLDTWFSSALFPFSALGWP 600
PathogenicSAV:                                                                                                D    
BenignSAV:         F                                                   D                                           
gnomAD_SAV:       #FLQ   * #    T  * IFW V          ILD  V  G  G    #  DD  KG V  IVG     #  S S       Y    S  D V* 
Conservation:  1204103031400322422333533443274345543401111010130922413212331152101212211203036154553343555454324785
SS_PSIPRED:    EE   HHHHHHHHHHH      HH HH       EEEEEE        EEEEE  HHHHHHHHHHHH       EEEE               HHH    
SS_SPIDER3:     E   HHHHHHHHHHH H HHHHH H        EEEEEE         EEEE  HHHHHHHHHHH       EEEEE    H  H      HHHH    
SS_PSSPRED:    EE  HHHHHHHHHHHHHH   EE E          EEE          EEEEE  HHHHHHHHHHHH      EEEEE     E     HHHHHHH    
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                 D                                     

                       10        20        30        40        50        60        70        80        90     
AA:            QETPDLARFYPLSLLETGSDLLLFWVGRMVMLGTQLTGQLPFSKVLLHPMVRDRQGRKMSKSLGNVLDPRDIISGVEMQVLQEKLRSGNLDPAELAIVAA 700
BenignSAV:                                                                                    L                    
gnomAD_SAV:        VFSC   Q    M  N P    D#T       A    Y NL  R IFQ S  QQ  R       LG    RL  RL       RY YT    T# V
Conservation:  1231331164522343542644266555543231243324632264343355711634544535454653423051143162133113343214101211
SS_PSIPRED:       HHHHHH          HHHHHHHHHHHHHH            EE HHH                 HHHH     HHHHHHHHHH    HHHHHHHHH
SS_SPIDER3:       H HHHH   HHHH HH HHHHHHHHHHHHHHHHH      EEEE  E E     EE          HHHH    HHHHHHHHH     HHHHHHHHH
SS_PSSPRED:       HHHHHH    HHH  HHHHHHHHHHHHHHH H        EEEE                     HHHH     HHHHHHHHHH    HHHHHHHHH
DO_DISOPRED3:                                                        DDDDDDDDDDD                                   
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       
MOTIF:                                                                  KMSKS                                      
BINDING:                                                                   K                                       

                       10        20        30        40        50        60        70        80        90     
AA:            AQKKDFPHGIPECGTDALRFTLCSHGVQAGDLHLSVSEVQSCRHFCNKIWNALRFILNALGEKFVPQPAEELSPSSPMDAWILSRLALAAQECERGFLTR 800
PathogenicSAV:                 T                                                                                   
BenignSAV:                                                                     M                                   
gnomAD_SAV:    E   G S RT K E  T   I       VVNS          * S#      VC   S SE  LMARS     S PL  V    H D T  G  WCS  *
Conservation:  2212347153231446866334232111422426421133324155543443254221121100030000110102114264232410340121123111
SS_PSIPRED:    HHHHH         HHHHHHHHHHHH      EE HHHHHHHHHHHHHHHHHHHHHHHH                 HHHHHHHHHHHHHHHHHHHHHHH 
SS_SPIDER3:    HHHHH       H HHHHHHHHHHHH     EE  HHHHHHHHHHHHHHHHHHHHHHHH                 HHHHHHHHHHHHHHHHHHHHH   
SS_PSSPRED:    HHHHH         HHHHHHHHHHH      E   HHHHHHHHHHHHHHHHHHHHHHHHH                HHHHHHHHHHHHHHHHHHHHHHH 
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            ELSLVTHALHHFWLHNLCDVYLEAVKPVLWHSPRPLGPPQVLFSCADLGLRLLAPLMPFLAEELWQRLPPRPGCPPAPSISVAPYPSACSLEHWRQPELE 900
BenignSAV:                                      C                                                                  
gnomAD_SAV:    #    S    YL   KF  L  K M AM   LLGS#    F    T  S C   AP     KD      S SR L    L      NS    Y C*   #
Conservation:  2311432434165421585354413431301000101311341123313535345313343544441322001000124534224812013113022223
SS_PSIPRED:     HHHHHHHHHHHHHHHH HHHHHHHHHHH          HHHHHHHHHHHHHH    HHHHHHHHHH            EEE        HHHH  HHHH
SS_SPIDER3:      HHHHHHHHHHHHH   HHHHHHHHHHH        HHHHHHHHHHHHHHHHHH HHHHHHHHH             EEEE         H    HHHH
SS_PSSPRED:     HHHHHHHHHHHHHHHHHHHHHHHHHHH            EEHHHHHHHHHHHHHH HHHHHHHHHH            EEE         HHH  HHHH
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            RRFSRVQEVVQVLRALRATYQLTKARPRVLLQSSEPGDQGLFEAFLEPLGTLGYCGAVGLLPPGAAAPSGWAQAPLSDTAQVYMELQGLVDPQIQLPLLA 1000
BenignSAV:                     Q                                               T                                   
gnomAD_SAV:    WC  W R  M    DVQ M     DW * P  R D  #  FL G  GS    V     C  SA TV   S    L   K  DSV    V   #V      
Conservation:  1131121233122523511223231341223032210110121021224035411213021012112103331113321212260223143212210231
SS_PSIPRED:    HHHHHHHHHHHHHHHHHHHH       EEEEEE  HHHHHHHHHHHHHHHHHH   EEEE            EEEE  EEEEEEEE     HHHHHHHHH
SS_SPIDER3:    HHHHHHHHHHHHHHHHHHH        EEEEE   HHHHHHHHHHHHHHHHH    EEEE           EEEEE   EEEEEE EEE  HHHHHHHHH
SS_PSSPRED:    HHHHHHHHHHHHHHHHHHHH        EEEEE  HHHHHHHHHHHHHHHHH    EEEE           EEEE    EEEEEEE     HHHHHHHHH
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                 D                                     DDDD                            

                       10        20        30        40        50        60   
AA:            ARRYKLQKQLDSLTARTPSEGEAGTQRQQKLSSLQLELSKLDKAASHLRQLMDEPPAPGSPEL 1063
BenignSAV:                                                     Q              
gnomAD_SAV:    T#    R R HR RVK S#  GG   GP  RF F      R   V RFWK  N  S   NL  
Conservation:  131014112101200012231021110103221121330121111102111111111111111
SS_PSIPRED:    HHHHHHHHHHHHHHHH   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH           
SS_SPIDER3:    HHHHHHHHHHHHHHH     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH            
SS_PSSPRED:    HHHHHHHHHHHHHHHH   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH           
DO_DISOPRED3:   D  D  DD DDDDDD DDDDDD  DD                          DDDDDDDDDD
DO_SPOTD:                                                          DDDDDDDDDDD
DO_IUPRED2A:            DDDDDDDDDDDDDDDDDDDDD D            DDDDDDDDDDDDDDDDDDD