Q5TAT6  CODA1_HUMAN

Gene name: COL13A1   Description: Collagen alpha-1(XIII) chain

Length: 717    GTS: 1.64e-06   GTS percentile: 0.510     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


      BenignSAV: 8      gnomAD_SAV: 369      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MVAERTHKAAATGARGPGELGAPGTVALVAARAERGARLPSPGSCGLLTLALCSLALSLLAHFRTAELQARVLRLEAERGEQQMETAILGRVNQLLDEKW 100
BenignSAV:                           T                                                       L                     
gnomAD_SAV:           R    V      *  T            R P S  R#*#R A VH        # L KV  RV L LM  QSW P I A  W   S   YK R
Conservation:  9212112211010010201120111111110001111001122113212221134213232223223524441245212112325333323312222433
STMI:                                                      MMMMMMMMMMMMMMMMM                                       
SS_PSIPRED:                                                   HHHHHHHHHHHHHHH   HHHHHH                             
SS_SPIDER3:                                                  HHHHHH HHHHHHH     HHHH                               
SS_PSSPRED:                                                          HHHHHHH                                       
DO_DISOPRED3:  DDD    D     D  D      DD D                 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDBBD D 
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:    DDDDDDDDDDDDDDDDD DDD DDDD   DDDD                                    DDDDDDDDDDDDDDDDDDDDD       DD

                       10        20        30        40        50        60        70        80        90     
AA:            KLHSRRRREAPKTSPGCNCPPGPPGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQ 200
BenignSAV:      F                 S                       H      T                                                 
gnomAD_SAV:     R   K#W    I     GSR HSR    SRP E#  ST   VCL # RGS  P VC HASL    S  LS    TTAQES L L     NVR MR QRE
Conservation:  2112341424222211625544444225235234336223225227343134132555566782382585563665253342261261573271274271
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DD                            DDDDDDDDDDDDDDDDDDDDDDDDD   D  D           DBBBBBBBBBBBBBDDDDDDDDD DDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            PGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQIIALKLLPLLNSVRLAPPPVIKRRTFQGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG 300
BenignSAV:                                                                  K                                      
gnomAD_SAV:    L T ER  D V R GN#YW*    L    #Y   V   M       *   T# M  Q I  K    G      LSCSA  R    DS    #   S    
Conservation:  2913925945822453244111111111111111111134523334324331324333263336235238536277358239429039129319247269
SS_PSIPRED:                              HHH                                                                       
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDB DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DD    DDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDD           DD   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            PPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKG 400
gnomAD_SAV:    S         E   #W   W        QETM V#R PMPAI DK  F ESM  M#V #    L   E NR  SN    #   KR #    I  S     
Conservation:  3692494492291382483192391393072481491142612823914913722811814821511614433311314239256427046149318247
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            EAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKG 500
gnomAD_SAV:    KT  N HD SQ     RA H     E     R  T K R   I G    FS S   TWMPV*      # KT SR    T  R E T       DNAAT 
Conservation:  3370063281561251593281271175063371374443122232234432572233222325349358218336145028055338446248116247
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDD D  BBBBD   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD  B
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
REGION:                                                 EMVDYNGNINEALQEIRTLALM                                     

                       10        20        30        40        50        60        70        80        90     
AA:            PRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEK 600
BenignSAV:                                   Q                                                                     
gnomAD_SAV:     SSE #NT    S  SR  NVLS MRRKSR S I   MVG   R   D L#D    R       K   Q     SSR L F* I  R       ATE   
Conservation:  3593262174173156593293292285181181262781373182393483793293162261121753534953832623513742832621613752
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  BBBBBB     DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            GFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGLDA 700
gnomAD_SAV:       * I  CD  EP E#    ST   LRIS LT     V LQ K    V  R    M E    S Q   ## #SQED      G  E    YR V    V
Conservation:  5128346336336359439469449439239728249657468435236426026415226237315315135236145335246346334336246422
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDBDBBDBDDDDDDDDDD                    DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
REGION:                                                                                                           A

                       10       
AA:            PCPLGEDGLPVQGCWNK 717
gnomAD_SAV:    A*S #KN    H  C# 
Conservation:  33652231253112221
SS_PSIPRED:                     
SS_SPIDER3:                     
SS_PSSPRED:                     
DO_DISOPRED3:  DDDDD    D       
DO_SPOTD:      DDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDD
REGION:        PCPLGEDGLPVQGCWNK