Q5VXU9  SHOC1_HUMAN

Gene name: SHOC1   Description: Protein shortage in chiasmata 1 ortholog

Length: 1444    GTS: 9.399e-07   GTS percentile: 0.198     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


      BenignSAV: 12      gnomAD_SAV: 604      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MTDTSVLDQWKASFFVEDFLEKKTITRMVTQINCEFEEVVPSSNPDSQIEVEEVSLYTHMDYNEVFTPVSCLEKCSALQNQNQDLFIDDKGILFVSSRKH 100
gnomAD_SAV:    I  NPF   R  RL      KR   A   SK    C D F    ANPHT ID   *HSQ    GI     Y     V E  S  S F   RMF #N K #
Conservation:  1132332332111313445342211111111221212334466341432214101210001213121111122002122110422220244221141222
SS_PSIPRED:        HHHHHHHH   HHHHH       EEEEE   EEEEE           HHHHH      EE EE        HHHH      EE  EEEEEE  HH 
SS_SPIDER3:         HHHHHHH   HHHHHH     EEEEEE   EEEEEE         HH HHH         E           H       EEEEEEEEEE     
SS_PSSPRED:       HHHHHHHHH   HHHHHHH     EEEEE   EEEEE                                   HHHHH         EEEEEE     
DO_DISOPRED3:  DDD     D      D        D      DDDDDDDDDDDDDDDDDDDDDDDDD                                            
DO_SPOTD:       D                                                                                                  
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            LPTLPTLLSRLKLFLVKDPLLDFKGQIFTEANFSRECFSLQETLEAFVKEDFCMDKVNFCQEKLEDTICLNEPSSFLIEYEFLIPPSLKPEIDIPSLSEL 200
gnomAD_SAV:       W S  R      A HTFS I       VI FG  L    AW   M     T  MK#   T  E MR H L    T CK     I  T TNTSLFP P
Conservation:  5623111325431214125421112102241022413323310120001122101251612113122300000414301242011111121111231223
SS_PSIPRED:       HHHHHH  EEEEE                  HHHHHHHH HHHHHHHHH   HHH  HHHH             EEEEE              HHHH
SS_SPIDER3:       HHHHH   EEEEE    E     E  HHHH HHHHHH H HHHH    H      H               H   E EEE             HHHH
SS_PSSPRED:       HHHHHHHHHHEEE             HHHHHHHHHHHHH HHHHHHH        HHHHHHH H        HHHHHHH              HHHH
DO_DISOPRED3:                 DD   D                                       DDDDDDDDDDDDDDDDDDDDDDDDDDD DDDDDDDDDDDD
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            KELLNPVPEIINYVDEKEKLFERDLTNKHGIEDIGDIKFSSTEILTIQSQSEPEECSKPGELEMPLTPLFLTCQHSSVNSLRTELQTFPLSPVCKINLLT 300
BenignSAV:                              S                                                                          
gnomAD_SAV:     D   TA    H      N  G   S        R    R I T     H  T  Y  L#   I   S S    LA L *SH#V   I  CL S T F I
Conservation:  1113131440310032013122132202122203111111211101011104302121012442343131121211121341125312223321111432
SS_PSIPRED:    HHHH         HHHHHHH          HHHH       HHHHH                              HH                  EEE 
SS_SPIDER3:    HHH       H  HHHHHHHHHHH         HH     HHHHHH       H                                          EE  
SS_PSSPRED:    HHHH         HHHHHHHHHHHH                                                                           
DO_DISOPRED3:  DDDDDBBBBBBBBB D                  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD  DD D                       
DO_SPOTD:                                                      DDDDDDDDDDDDD                                       
DO_IUPRED2A:                                                    DD D DDDDD                                         

                       10        20        30        40        50        60        70        80        90     
AA:            AEESANEYYMMWQLERCRSPLNPFLLTVPRIQEPHSQYSVTDLKKIFSVKEESLVINLEKAEWWKQAGLNLKMMETLEHLNTYLCHDNLSSNDTKIEIFL 400
gnomAD_SAV:           H  I*  DS  RR K    IM      Y       S NL      R M S   V R*E GE S NIT    Y     G      S  TL    
Conservation:  2212102201331462411121133424412233021023114121111121120103210112101121100021340211010110111011215132
SS_PSIPRED:     HHHHHHHHHHH HHH      HH               HHHHHHH  HH       HHHHHHHHH    HHHHH  HHHHH             HHHH 
SS_SPIDER3:        HHHH HHHHHHH        EEE            HHHHHH    H       HHHHHHHHH       HHH HH                   E 
SS_PSSPRED:    HHHHHHHHHHHHHHHHH       E              HHHHHHH   HHHHH   HHHHHHHHHH   HHHHHHHHHH                    
DO_DISOPRED3:   D   DD     DDDDDDDDD DDDDDD  DD                DDDDDDDDDDDDDD                   DDDDDDDDDDDDDDDD  D
DO_SPOTD:                                                                               DDDD DDDDD   DDDDDDDDDDDDDD
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            PTKVLQLESCLEHKSHSSPIALIDEKSTNAHLSLPQKSPSLAKEVPDLCFSDDYFSDKGAAKEEKPKNDQEPVNRIIQKKENNDHFELDCTGPSIKSPSS 500
BenignSAV:                    R                                                                                    
gnomAD_SAV:    LM      P VQRERY   V  T K  #I  I   R#       ITG S  G HS    EV  * T     LG     NT  TYYY    SRAFT   P 
Conservation:  2121032312431211211102002010111021200121100101010111001111011111021111201001110110111011012020011101
SS_PSIPRED:       HHHHHHHHHH           HHH                                           HHHHHHH                       
SS_SPIDER3:       HHHHHHHHH        E                    HH                          HHHHHHH                        
SS_PSSPRED:       HHHHHHHHHH                                                          HHH                          
DO_DISOPRED3:    DD DDDD DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:       DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:                       DD          DDDDDD                     DDDDDDDDDDDDDDDDDDDD    D   DDDDD        

                       10        20        30        40        50        60        70        80        90     
AA:            SIIKKASFEHGKKQENDLDLLSDFIMLRNKYKTCTSKTEVTNSDEKHDKEACSLTLQEESPIVHINKTLEEINQERGTDSVIEIQASDSQCQAFCLLEAA 600
gnomAD_SAV:         T   #      # EP  N  L *  *  RP       G K R   VR     K   M R      KT  DK     T   V ETR  # *FIK# 
Conservation:  1000100110111002136483276378332121111110000121000211000121111121111002110221001134143454482276136242
SS_PSIPRED:          HHH          HHHHHHHHHH              HH    HHH                HHHHHHH     EEEEE  HHHHHHHHHHHHH
SS_SPIDER3:         H             HHHHHHHHHH                H                 E    HHHHHH     EEEEEE   HHHHHHHHHHHH
SS_PSSPRED:                       HHHHHHHHHH                                                   EEEEE  HHHHHHHHHHHHH
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                       
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDD   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                        
DO_IUPRED2A:   DD   DDDD                            DDDDDD D  DDDDD              DDDD         D                    

                       10        20        30        40        50        60        70        80        90     
AA:            ASPILKNLVSLCTLPTANWKFATVIFDQTRFLLKEQEKVVSDAVRQGTIDEREMTFKHAALLHLLVTIRDVLLTCSLDTALGYLSKAKDIYNSILGPYLG 700
BenignSAV:                                                     T                                                   
gnomAD_SAV:     FL    F     # A D         K # FF  EV  I NV HR  V  S    N  T  # PLA  G    RN #R          T S T R  WA
Conservation:  7152521411221012114272361463677466676624221112210122302432444373775267576383523654772272237322221271
SS_PSIPRED:    HHHHHHHHHH           EE     HHHHHHHHHHHH HH       HHHHHHHHHHHHHHHHHHHHHHHH  HHHHHHHHHHHHHHHHH  HHHHH
SS_SPIDER3:    HHHHHHHHHHH         EE   H HHHHHHHHHHHHH HHH      HHHHHHHHHHHHHHHHHHHHHHHH  HHHHHHHHHHHHHHHH HH HHHH
SS_PSSPRED:    HHHHHHHHHHH         EEEE   HHHHHHHHHHHHH          HHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHH
DO_DISOPRED3:                                          DDDDDDDDD                                                   
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            DIWRQLEIVQFIRGKKPETNYKIQELQCQILSWMQSQQQIKVLIIIRMDSDGEKHFLIKILNKIEGLTLTVLHSNERKDFLESEGVLRGTSSCVVVHNQY 800
BenignSAV:                                      L                                                     K            
gnomAD_SAV:           VIHCV RE  KAS# M     EV   R     V     VG    C   # L T  E      A      I    DT    KAI  R IIYS* 
Conservation:  1645562663332142262427313732442132111100335542432330221042116213161122130422110052210532302264642323
SS_PSIPRED:    HHHHHHHHHHHHH       HHHHHHHHHHHHHHHH    EEEEEEEE  HHHHHHHHHHHHH    EEEE            HHHH    EEEEEE   
SS_SPIDER3:    HHHHHHHHHHHH        HHHHHHHHHHHHHHH     EEEEEEEE   HHHHHHHHHHH     EEEE              HE   EEEEEEEE  
SS_PSSPRED:    HHHHHHHHHHHHH       HHHHHHHHHHHHHHHH    EEEEEEEE   HHHHHHHHHHHHH   EEEE                    EEEEEEE  
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            IGADFPWSNFSFVVEYNYVEDSCWTKHCKELNIPYMAFKVILPDTVLERSTLLDRFGGFLLEIQIPYVFFASEGLLNTPDILQLLESNYNISLVERGCSE 900
BenignSAV:             K                                                                                           
gnomAD_SAV:     #T     K LL  K H    CR*I  YE    SS   Q        A G#      C     *   GV         A   *            KDF  
Conservation:  5645786118545476521334261129223252533624234221000000330011133321676364366642313145334751535354982231
SS_PSIPRED:          HHHEEEEEEE      HHHHHHHH    EEEEEEE    HH     HHH     EE    EEEEE   HH  HHHHHHHHH   EEEEE    H
SS_SPIDER3:            HEEEEEEE      HHHHHHHH    EEEEEEE    EH HHHHHHH           EEEEEE      HHHHHHHHH    EEEE    H
SS_PSSPRED:             EEEEEEE      HHHHHHHHH   EEEEEEE     HHHHHHHHH    EEEEE  EEEEEE      HHHHHHHHH   EEEEE    H
DO_DISOPRED3:                                                 DD     D                                             
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            SLKLFGSSECYVVVTIDEHTAIILQDLEELNYEKASDNIIMRLMALSLQYRYCWIILYTKETLNSEYLLTEKTLHHLALIYAALVSFGLNSEELDVKLII 1000
BenignSAV:                                    C                                   P                                
gnomAD_SAV:    PF   A  KYF LM#S    V     I    C      # #  T  L    C C    # K     CV   TI      TF #V  S PS   M I F  
Conservation:  6621372231636586771756338333560032325044256368548632684553122021223242214325633575342231243344256434
SS_PSIPRED:    HHHHH      EEEEE    EEEEEEHHH   HHHHHHHHHHHHHHHHH  EEEEEEEE           HHHHHHHHHHHHHHHH        EEEEEE
SS_SPIDER3:    HHHH       EEEEE    EEEEEEHHH   HHHHHHHHHHHHHHH    EEEEEEEE           HHHHHHHHHHHHHHHH       EEEEEEE
SS_PSSPRED:    HHHH      EEEEEE    EEEEE HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE           HHHHHHHHHHHHHHHHH      EEEEEEE
DO_DISOPRED3:                                                                      D                               
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            APGVEATALIIRQIADHSLMTSKRDPHEWLDKSWLKVSPSEEEMYLLDFPCINPLVAQLMLNKGPSLHWILLATLCQLQELLPEVPEKVLKHFCSITSLF 1100
gnomAD_SAV:      EI*E     ** TG  S    TE Y C   Y*V      K   SPN  #V    V  I   #   Y*V S  QG V    S# L N         AP 
Conservation:  3242243611724753225424112502495757514246629027418775676657368243264135616320492224634416345373234434
SS_PSIPRED:       HHHHHHHHHHHHHHHHHH    HHHHH  HHH     HHHHHHH      HHHHHHHHHH   HHHHHH  HHHHHHH     HHHHHHHHHHH   
SS_SPIDER3:       HHHHHHHHHHHHHHHHHH    HHHH           HHHHHH       HHHHHHHHHH   HHHHH   HHHHHHH     HHHHHHHHHHH   
SS_PSSPRED:    E  HHHHHHHHHHHHHHHH                     HHHHHHH      HHHHHHHHHH   HHHHHH  HHHHHHH     HHHHHHHHHHHH  
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                             DDDDD                                                        
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            KIGSSSITKSPQISSPQENRNQISTLSSQSSASDLDSVIQEHNEYYQYLGLGETVQEDKTTILNDNSSIMELKEISSFLPPVTSYNQTSYWKDSSCKSNI 1200
BenignSAV:                                                                  T           G                          
gnomAD_SAV:    NSV T V#  L  *LSE   S  T S           IL *R KD #    R   R   I TF ES       G      S A  S I#*  GT R    
Conservation:  1222020111020111111010100101000010112123311111110120121111112032130000000002123430000000003122111211
SS_PSIPRED:                                       HHHH                              HHHHH                          
SS_SPIDER3:                                       HHHH                               HHH                           
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD    DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD      
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:             DDDDDDDDDDDDDDDDD                                                                         

                       10        20        30        40        50        60        70        80        90     
AA:            GQNTPFLINIESRRPAYNSFLNHSDSESDVFSLGLTQMNCETIKSPTDTQKRVSVVPRFINSQKRRTHEAKGFINKDVSDPIFSLEGTQSPLHWNFKKNI 1300
gnomAD_SAV:     L   L  H#QL  L S P V NG    HGLY V  H    I       * KM LD#H M          N    EH LGL     SI     *   E T
Conservation:  1000142121110000001111111213231143221002421012021210011122212000000000000100110030121211121002231211
SS_PSIPRED:          HHH                                       HHHHH   HHHHH      HH                               
SS_SPIDER3:                                  E                  HH        E                                        
SS_PSSPRED:                                                                       HHH                             H
DO_DISOPRED3:                 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DD DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDBB
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:                     D                        D  DD     DDD             DDD                            

                       10        20        30        40        50        60        70        80        90     
AA:            WEQENHPFNLQYGAQQTACNKLYSQKGNLFTDQQKCLSDESEGLTCESSKDETFWRELPSVPSLDLFRASDSNANQKEFNSLYFYQRAGKSLGQKRHHES 1400
BenignSAV:                                                                                    K                    
gnomAD_SAV:      K  #    PCD   N   #             NY  GG  VF     E  S   D    S  GV C     TDRE* K  * H  T  R       D 
Conservation:  0011014212211102220000032222241101111202112110111100122101321110122112101120121012120111210021231011
SS_PSIPRED:    HHHH                            HHH                                         HHH    HHHHH            
SS_SPIDER3:    HHH                         HH                                              HH    HHHH              
SS_PSSPRED:    HHHH                                                                              HHHH              
DO_DISOPRED3:   BBBBBDDDDDDDDDDDD DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DDDDDDDDDDDDDDDDDDDDDDDDDDDD    DDDDDDDDDDDDD
DO_IUPRED2A:                                                                                                 DDDDDD

                       10        20        30        40    
AA:            SFNSGDKESLTGFMCSQLPQFKKRRLAYEKVPGRVDGQTRLRFF 1444
BenignSAV:                             C                   
gnomAD_SAV:     L   NNK* A C Y     C  *HPV* # L  A R*IW T  
Conservation:  21001012013212321232173167234435330444343233
SS_PSIPRED:                        HHH    EE         EEEE  
SS_SPIDER3:                  H       H  E E E   E   E E E  
SS_PSSPRED:                       HHHHHHHHHH        EEEEE  
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDD  DDDD   DDD             
DO_SPOTD:      DDDDDDDDDDDDDDDDDDD D                       
DO_IUPRED2A:   DDDD