Q86YC2  PALB2_HUMAN

Gene name: PALB2   Description: Partner and localizer of BRCA2

Length: 1186    GTS: 8.717e-07   GTS percentile: 0.169     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


PathogenicSAV: 4      BenignSAV: 47      gnomAD_SAV: 579      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MDEPPGKPLSCEEKEKLKEKLAFLKREYSKTLARLQRAQRAEKIKHSIKKTVEEQDCLSQQDLSPQLKHSEPKNKICVYDKLHIKTHLDEETGEKTSITL 100
PathogenicSAV: #                                 P                                                                 
BenignSAV:             H      E R         C        H        Y                V                                     
gnomAD_SAV:    #  LS  L RFQKE   R  *   * * G  VT# KHG K  EM   V T  KG#  F *R V A*  P    KNVRI    Y     H   A N YV F
Conservation:  5201112121010215432362233352134424334433443231213233222212112112211104212021121204422322211223232142
SS_PSIPRED:              HHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH                         HHHHHH               
SS_SPIDER3:                HHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH                          HH            E E   
SS_PSSPRED:                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH                          HHHH               E 
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDD                     DDD DDDDDDDDDDDDDD DDDDDDDDDDDDDDDDDD                DDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            DVGPESFNPGDGPGGLPIQRTDDTQEHFPHRVSDPSGEQKQKLPSRRKKQQKRTFISQERDCVFGTDSLRLSGKRLKEQEEISSKNPARSPVTEIRTHLL 200
BenignSAV:       E                                                                                                 
gnomAD_SAV:    HI  DCI  V    V TT  R#   KR     GN G A   *   S  Q K     LR  H       F    R #   KQ    IHGI     RKI   
Conservation:  2024322112023222001221113311111101211232112213133222221122222111214111121201313111012131115212132124
SS_PSIPRED:                            HHH          HHH     HHH HHHHHHHH        HHHHHH   HHHHHHHHH                 
SS_SPIDER3:                                                    H                           HHHH                    
SS_PSSPRED:                                                 HHHHHHHHHH                    HHHHHHH                  
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD        DDDDD DDDDDDDDDDDDDDDDDDDDDDDDDDDD
MODRES_P:                                                                             S                 S          

                       10        20        30        40        50        60        70        80        90     
AA:            SLKSELPDSPEPVTEINEDSVLIPPTAQPEKGVDTFLRRPNFTRATTVPLQTLSDSGSSQHLEHIPPKGSSELTTHDLKNIRFTSPVSLEAQGKKMTVST 300
BenignSAV:                       G                     D       L                                                   
gnomAD_SAV:         F#  L        G I T      AR      G LD  TG R LS    G D     GQ    V NKF I NQ  FG   S     RDE   I I
Conservation:  0111012011111120111112232021122111011130121112112211111231121311111020042211121110223201112212102011
SS_PSIPRED:                                                                                            HHH   EEEE  
SS_SPIDER3:                                                                                             HH         
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DDDDDDDDDD D
MODRES_P:                                                                                          S               

                       10        20        30        40        50        60        70        80        90     
AA:            DNLLVNKAISKSGQLPTSSNLEANISCSLNELTYNNLPANENQNLKEQNQTEKSLKSPSDTLDGRNENLQESEILSQPKSLSLEATSPLSAEKHSCTVPE 400
BenignSAV:             V                        C  S                                                               
gnomAD_SAV:    G P     VNRC   S# F   E        # D#HS#      S  K   #N#    RGSR DGS    K#  V    T I   AC     RLC SMR 
Conservation:  2220122101112132111241212103112110112102100112211112123123112111212111221121010110120122221232556233
SS_PSIPRED:      HHH HHH                                   HHH                        HHHH                         
SS_SPIDER3:      HHH                       HHH             HHHH                                               EE   
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDD DDDDDDD DDD   DD          D D DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DDD   
MODRES_P:                                                                                 S          S             

                       10        20        30        40        50        60        70        80        90     
AA:            GLLFPAEYYVRTTRSMSNCQRKVAVEAVIQSHLDVKKKGFKNKNKDASKNLNLSNEETDQSEIRMSGTCTGQPSSRTSQKLLSLTKVSSPAGPTEDNDLS 500
BenignSAV:                  Q          M                    E                                            T         
gnomAD_SAV:    V  LA  CC    #  Y  R N  M        A    #L     G N  V       ERR   I #  A  LN   F   F     # AT L   KY  
Conservation:  8435755675456845623432236545335585225440412041021121130221122212212211211332122103402231221113011002
SS_PSIPRED:         HHHH               HHHHHHHHHHH                                                              HH 
SS_SPIDER3:           EEEE             HHHHHHHH                                                                    
SS_PSSPRED:           EE               HHHHH                                                                       
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:                       DD            DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
MODRES_P:                                                           S                                              

                       10        20        30        40        50        60        70        80        90     
AA:            RKAVAQAPGRRYTGKRKSACTPASDHCEPLLPTSSLSIVNRSKEEVTSHKYQHEKLFIQVKGKKSRHQKEDSLSWSNSAYLSLDDDAFTAPFHRDGMLSL 600
BenignSAV:                   R     I       L                             R                                         
gnomAD_SAV:     N I    D   IRR   D  S      S  SAA  L     T *A LQ   QK  L#R   T  PYH   F P   #    W NN VM Q D  E  T 
Conservation:  1211012113313232131112110102202110111111112222111201011111012212120222213012213210222220112111222332
SS_PSIPRED:                                              HHHH    HHH  EEEE               HHHHHHH                  H
SS_SPIDER3:                                              HHHHH   H                                                H
SS_PSSPRED:                                                                                                       H
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDD DDDDDD   DD DD  DD  DDDD                D     DD                               

                       10        20        30        40        50        60        70        80        90     
AA:            KQLLSFLSITDFQLPDEDFGPLKLEKVKSCSEKPVEPFESKMFGERHLKEGSCIFPEELSPKRMDTEMEDLEEDLIVLPGKSHPKRPNSQSQHTKTGLSS 700
BenignSAV:                                                                            Q   T                     P  
gnomAD_SAV:              E    # N RTP   R T  P  LM T  # TSR       NYT L  V   HR  D  G*QKN M   #    ##  L  *YR M  C 
Conservation:  3152415232484884545719623722113121231213100121020111010131112111112120121121111211131020012111122433
SS_PSIPRED:    HHHHH                  HH                               HH       HHHH                               
SS_SPIDER3:    HHHH      E            H                  H         EE           HHHH                               
SS_PSSPRED:    HHHH                                                                                                
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:                             D             DD           DD D DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD   
MODRES_P:                                                                 S                                        

                       10        20        30        40        50        60        70        80        90     
AA:            SILLYTPLNTVAPDDNDRPTTDMCSPAFPILGTTPAFGPQGSYEKASTEVAGRTCCTPQLAHLKDSVCLASDTKQFDSSGSPAKPHTTLQVSGRQGQPTC 800
BenignSAV:                V          V    L                              K                                   E     
gnomAD_SAV:     M*  IL  M P A SN    E   S   V  ANLV    DACKR PI  V Q    R I  FE        IE#LN * N#  SRI     VS *K  S
Conservation:  3236367123112311112021123325925615731142201202220112021111021111121211021211111212202211102111223120
SS_PSIPRED:      EEE                                                      HHH                                      
SS_SPIDER3:      EEE                        EEE                             H                                      
SS_PSSPRED:      EEE                                                                                               
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:           DDDDDDDDDDDDDDDDDDDDDDDD  DDDDDDDDDDD  DD                        DDDDDDDDDDDDDDDDDDD D     D
MODRES_P:                                                                                      S                   

                       10        20        30        40        50        60        70        80        90     
AA:            DCDSVPPGTPPPIESFTFKENQLCRNTCQELHKHSVEQTETAELPASDSINPGNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKA 900
BenignSAV:                                                                    S                                    
gnomAD_SAV:    #  C L  SS LL T  S KY   G    A #   FK N    PS  V    SSP*     NDSLC YCLGA#     K D         WKYI  #R V
Conservation:  2031131112220221222213112200221011122211221022122102218353635431323626854443841351223664393612647743
SS_PSIPRED:                HHH  HHHH       HHH                       EEEEEEEE       EEEEEEEE        EEEEE EEEEEEE  
SS_SPIDER3:                HH     H        HHHH    HH                EEEEEEEE     EEEEEEEEEE        EEEEE   EEEEEEE
SS_PSSPRED:                                       HHH                 EEEEE            EE           EEEEEE EEEEEE  
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                                  
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                                   
DO_IUPRED2A:   DDDDDDD   DDD  D                  D   DDDDDDDDD                                                     

                       10        20        30        40        50        60        70        80        90     
AA:            LDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGG 1000
PathogenicSAV:                       G                                                                             
BenignSAV:                     A              M      W                          V                               E  
gnomAD_SAV:     YT   G  *  L T #QL   FAL  M  RM I  E W VG S  S YFP  G KQ I      T G    RE    R    PP R I#F M    E  
Conservation:  2110292224492435366444324543033475677178516453822523212135244335343443972236653612311262544114331552
SS_PSIPRED:      HHHHHHHHEEE     EEEEEE      EEEEE      EEEEEEEE     HHHHHEE     EEEEE    EEEE        EEEEEEEE     
SS_SPIDER3:    E HHHHHHHEHEHH    EEEEEE   E  EEEEE     E EEEEEEE     HHHHHHHH   EEEEEE   EEEEEE       EEEEEEEE     
SS_PSSPRED:      HHHHHHHHHHHH    EEEEEE     EEEEEE    HHHHHHHHH      HHHHHHH    EEEEE     EEEE        EEEEEEEE     
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT 1100
BenignSAV:                             T     VL          A                               G                         
gnomAD_SAV:         #  S QIT I TDARRIL T  D  VI  VL *  TSAH    T NV  H    Y   C   E  L   RQ SVRGGKLS*     FT     R 
Conservation:  2212383463536357557382245667481232445893266669344254234343394466742967936523433312312424262535289243
SS_PSIPRED:      EEEE  HHHHEEEEEE      HH  EE    EEEEE     EEEEEE        HHHHHH   EEEEEE         HHH    EEEEEE     
SS_SPIDER3:    E  E       EEEEEEE     HHE  E     EEEEE    EEEEEEE     HHHHHHHHH    EEEEEE               EEEEEE     
SS_PSSPRED:            HHHHHHHHHHHH HHHHHH      EEEEEE    HHHHHH      HHHHHHHHHHHHHHHHEEE               EEEEEE     
DO_DISOPRED3:                                                                                 DDDDDDD              
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80      
AA:            LSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 1186
BenignSAV:         A        H                        V   P          I               Y                
gnomAD_SAV:     RM# TP* RL   V   P DNM HPY   V S E TT R  F #    RF   C  R   MEC# I  Y  VR     # A*Y  
Conservation:  34224323239231146353535121033534548243475422513231322011115342343111215735213434234110
SS_PSIPRED:     EEEEEEEE        EEE       EEEEE    HHHHHHH   EEEE         EEEEE     EEEEEEE   EEEEE  
SS_SPIDER3:     EEEEEEE        EE    EE  EEEEE    HHEHHHHH     EEE       EEEEEE    EEEEEEE    EEEEEE 
SS_PSSPRED:      EEEEEEE               HHHHHHHH    HHHHHHHH HHHH         EEEEEE     EEE       EEEEEE 
DO_DISOPRED3:                                                                                        
DO_SPOTD:                                                                                            
DO_IUPRED2A: