Q8NES3  LFNG_HUMAN

Gene name: LFNG   Description: Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe

Length: 379    GTS: 1.979e-06   GTS percentile: 0.646     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


PathogenicSAV: 2      BenignSAV: 5      gnomAD_SAV: 184      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MLKRCGRRLLLALAGALLACLLVLTADPPPPPLPAERGRRALRSLAGPAGAAPAPGLGAAAAAPGALVRDVHSLSEYFSLLTRARRDAGPPPGAAPRPAD 100
BenignSAV:                                          R                                                              
gnomAD_SAV:               V S                                                       G           IH   NEV SS  V#  T 
Conservation:  1111111111110110111111100001111111111111111111111111111111110010001101111010000000000001111111111111
STMI:                  MMMMMMMMMMMMMMMMMMMMM                                                                       
SS_PSIPRED:        HHHHHHHHHHHHHHHHHHHHH         HHH  HHHHH              HHH            HHHHHHHHHHHHHH             
SS_SPIDER3:         HHHHHHHHHHHHHHHHHHH                                          H      HHHHHHHHHHHH               
SS_PSSPRED:       HH HHHHHHHHHHHHHHHHHH                                                 HHHHH H HHHHHH             
DO_DISOPRED3:  BBBBDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD D             DDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:                                DDDDDDDDDDDDDDDDD         D                               DDDDDDDDDDDDD
SITE:                                                                                               RD             

                       10        20        30        40        50        60        70        80        90     
AA:            GHPRPLAEPLAPRDVFIAVKTTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGNVVITNCSAAHSRQALSCKMAVEYDRFIESGRKWFCHVD 200
PathogenicSAV:                                                                                        L            
gnomAD_SAV:    RQ#    #   RQ   V   I RN    C   V    F CR  VM     RQYK    LM   L    #TT  HR  C    M  GC VK VT     M 
Conservation:  1110110002010211243132011211421331223231111144465511611210220424173642243436648643353415413112758869
SS_PSIPRED:               HHHEEEEEE  HHHHHHHHHHHHHHHHHH     EEEE    HHHHHH   EEE        HHHHHHHHHHHHHHHHH    EEEEE 
SS_SPIDER3:               HHHEEEEEE  HHHHHHHHHHHHHHHH H   EEEEE     HHHHH   EEE E       HHHHHHHHHHHHHHHH    EEEEEE 
SS_PSSPRED:                  EEEEEE  HHHHHHHHHHHHHHHHHHH    EE      HHHHHH    E     HHHHHHHHHHHHHHHHHHH      EEEEE 
DO_DISOPRED3:  DDDDDDD                                                                                             
DO_SPOTD:      DDDDDDD                                                                                             
DO_IUPRED2A:   DDDDDD                                                                                              
BINDING:                                   R                                                                       
DISULFID:                                                                         C          C                 C   
CARBOHYD:                                                                        N                                 

                       10        20        30        40        50        60        70        80        90     
AA:            DDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMERVSENKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEAL 300
PathogenicSAV: N                                                                                                   
BenignSAV:                      L    I                                                                             
gnomAD_SAV:    N D # QPP  W    CL MW I I M R E   R IVW GK   #L         T     C      RL V VV  V M  # W    Y VS  MKT 
Conservation:  9877452027313722521117595867675466261512112131131575956757564342630451543432262165224285444545475323
SS_PSIPRED:       EE HHHHHHHHH       EEE        EEEEEE        EE        EEEE HHHHHHH HHH              HHHHHHHHHHHHH
SS_SPIDER3:          HHHHHHHH        EEEE      EEEEEEE       EEEEEE      EHH HHHHHHHH H         HH       HHHHHHHHHH
SS_PSSPRED:          HHHHHHHHHH      EEE                                 EE  HHHHHHH HHH                    HHHEHHH
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                       D                                                               
BINDING:       D                                                                                                   
METAL:          D                                                                                                  
ACT_SITE:                                                                                               D          
DISULFID:                                                                 C                                        

                       10        20        30        40        50        60        70        8
AA:            LGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADPSRFRSIHCHLYPDTPWCPRTAIF 379
BenignSAV:           H                                      M                                 
gnomAD_SAV:     A  F C S      KK  R#  LD QK      SI V NQ TIQLQ A L  VH    H    D   AAS# RC  V 
Conservation:  6321523312345446362241111400534234421322142513042331124242212334231312023100110
SS_PSIPRED:    H    EE               HHHH                EEE              EEEEEEE             
SS_SPIDER3:    H    E            HH  HHHH                EEEE             EEEEE E             
SS_PSSPRED:    H   EEE               HHHH                EE               EEEEEE              
DO_DISOPRED3:                                                                                 
DO_SPOTD:                                                                                     
DO_IUPRED2A:                                                                                  
METAL:                      H                                                                 
DISULFID:                                                                     C        C