Q92900  RENT1_HUMAN

Gene name: UPF1   Description: Regulator of nonsense transcripts 1

Length: 1129    GTS: 7.716e-07   GTS percentile: 0.128     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


PathogenicSAV: 1      BenignSAV: 2      gnomAD_SAV: 294      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAGGPGGAGAGAAAGQLDAQVGPEGILQNGAVDDSVAKTSQLL 100
BenignSAV:                                                                         S                               
gnomAD_SAV:     T     S   #H L  S  TG           Q AE   #G#  STHS  SV  #  PR                  EHK     RT  NR        
Conservation:  2000101111100000000010101100011000010201010010121125555555555555555555522221137543363764466373956967
SS_PSIPRED:                 EE    HHHH                                                                    HHHHHHHHH
SS_SPIDER3:         E       EE  HHHHHHH                                                                   HHHHHHHHH
SS_PSSPRED:                       HHHHH                                                                    HHHHHHHH
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDD DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD  DDD DDDD DDDDD          D
MODRES_P:               S                    S                                                                     

                       10        20        30        40        50        60        70        80        90     
AA:            AELNFEEDEEDTYYTKDLPIHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK 200
gnomAD_SAV:    V    K      H M              N    IH   T     S   S            G                       S   I         
Conservation:  3999999777966967779479977979977967779999999799777999969797977999799777999979697599797996767796677677
SS_PSIPRED:    HH                               EEEE     EEEE      HHHHHHHHHH    EEEE         EEEEE      EEEEEEEE  
SS_SPIDER3:    HH                  HHHHH     H HEEEE     EEE      HHHHHHHHHHH    EEEE         EEEEEE     EEEEEEE   
SS_PSSPRED:    HHH                HHHHHH        EEEE                 HHHHHHHHH   EEEE         EEEEE      EEEE  E   
DO_DISOPRED3:  DDDDDDDDDDDD                                                                                        
DO_SPOTD:      DDDDDDDDDDDDD                                                                                       
DO_IUPRED2A:   DD                                                                                                  
ZN_FING:                           HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK

                       10        20        30        40        50        60        70        80        90     
AA:            ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAY 300
gnomAD_SAV:     G           TG      M   GL       E                MQT        #        DA  M G    L A G  R  F W     
Conservation:  7679797767677767699979979776797777597775677777797677677796779997777777799576997799997797996799799799
SS_PSIPRED:       EEEEEE                HHH           EE      HHHHHHH    HHHHHHHHHHHHH     HHHHH                 HH
SS_SPIDER3:      EEEEEEE                H H EE E   EEEEEEEE   HHHHHH     HHHHHHHHHHHHH     HHHH            E     HH
SS_PSSPRED:      EEEEEEE                      HHH HHHHHHE     HHHHHHHH   HHHHHHHHHHHH     HHHHH                  HH
DO_DISOPRED3:                                                                                D     D               
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                 DDDD                  
ZN_FING:       ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKEN                            

                       10        20        30        40        50        60        70        80        90     
AA:            QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGD 400
gnomAD_SAV:           S I M  N       #   G       V   R    C P           DV       VVR      Q E    S  R           C  
Conservation:  9779679999967979979797977656796677979999779797799977555555555556799669777997797666769977799979974799
SS_PSIPRED:    HHHHHHHHHHHHHHHHHHHHHHHHH   EEEEEEEE    EEEEEE           EEEE          EEEEEE        EEEEEEEEE      
SS_SPIDER3:    HHHHHHHHHHHHHHHHHHHHHHH     EEEEEEE     EEEEEEE          EEEEHHH       EEEEEE       EEEEEEEEEE     E
SS_PSSPRED:    HHHHHHHHHHHHHHHHHHHHHHHH    EEEEEE     EEEEEEEE             HHHH      EEEEEEE        EEEEEEEEE      
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            EIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSL 500
gnomAD_SAV:    DV L     M       LS              I     M  M    M      E    GM  I V   V  H  V        F    M I        
Conservation:  7977997776779775696699997967999997776966777797766999676779677795567777777776399977999777667666966779
SS_PSIPRED:    EEEEEEE            EEEEEEE   HHHHHHHHHHHHHH      HHHHHHHH      HHHH                HHHHHHHHHHH   EEE
SS_SPIDER3:    EEEEEE        E    EEEEEEE   HHHHHHHHHHHHH       HHHHHHH        HH                 HHHHHHHHHHH   EEE
SS_PSSPRED:    EEEEEEE       EE   EEEEEEE    HHHHHHHHHHHHHH     HHHHHHHH       HHH                HHHHHHHHHHHH   EE
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       
BINDING:                                                                                            Q              

                       10        20        30        40        50        60        70        80        90     
AA:            IQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSS 600
gnomAD_SAV:          M    #     C   #*DIRL                 L RM # IM  S      V                  VA                 
Conservation:  7767977676776776665977976697979999997777999996577979777799997996799979799996796776977777999779999769
SS_PSIPRED:    EE      HHHHHHHHHHHHHH     EEEE    HHHHHHHHHHHH   EEEEE    HHH    HHHHHHHHHHH     HHHHHHHHHHHHH    H
SS_SPIDER3:    EE        HHHHHHHHHHHH     EEEE     HHHHHHHHHHH    EEEE    EH      HHHHHHHHHH     HHHHHHHHHHHHH   HH
SS_PSSPRED:    EE        HHHHHHHHHHHHH    EEEE     HHHHHHHHHHHH  EEEEE   HHHH    HHHHHHHHHHHH    HHHHHHHHHHHHHHHHHH
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:       D                                                                             DDDDDDDD DDDD     
NP_BIND:            GTGKT                                                                                          
MODRES_P:                                                                      S                                   

                       10        20        30        40        50        60        70        80        90     
AA:            ADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLV 700
gnomAD_SAV:    T   # WTS H  G   P  T            L  V TR C L         K  Y       #                 Y TVS  R          
Conservation:  6777677797797967777767666555667699977776665776669777776697796597566645485596966566765675577667665666
SS_PSIPRED:    HHHHHHHHHHHHHHHHHHH   EEEE       HHHH     EEEE        HHHHHHHH    EEEEE        EE  HHHHH      HHHHHH
SS_SPIDER3:    HHHHHHHHHHHHHHHHHHHH  EEEE         H      EEEEE       HHHHHHHH    EEEEE        EEE HHHHH      HHHHHH
SS_PSSPRED:    HHHHHHHHHHHHHHHHHHHH  EEEE       HHH H    HEHHHHHH     HHHHHHHH   EEEEE        EE  HHHHHH     HHHHHH
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:    DD                                                                                                 
BINDING:                                                                                  Q                        

                       10        20        30        40        50        60        70        80        90     
AA:            VLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQ 800
gnomAD_SAV:        Q  L       QR             F     I V H   RY               I  *     L          T MQR           LY 
Conservation:  5796797799776955555655855645345976746756747697777976667777777767799999979779965796677776767775767769
SS_PSIPRED:    H     EE        HHHHH  HHHH          HHHH               EEEEE    EEE         HHHHHHHHHHHHHHHH    HHH
SS_SPIDER3:    H     EEE       HHHH    HHEE   EEE   HHHH               EEEEE    EEEE        HHHHHHHHHHHHHHHH    HHH
SS_PSSPRED:    HH   EEEE HHHHH HHHHHH HHHH    EE    HHH                EEEEEE    EE         HHHHHHHHHHHHHHHHH      
DO_DISOPRED3:                                                                    D   DD                            
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       
BINDING:                   Y                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            IGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLL 900
PathogenicSAV:                                         R                                                           
gnomAD_SAV:      V                   P       V   T             M      S        S         S     IVT   R          Y Q
Conservation:  7977677677666757577997999999975765756659799799965769659777999999979979777997957679767965565344655455
SS_PSIPRED:    EEEE  HHHHHHHHHHHHHH     HHHH   EEEE        EEEEEEE               HHHHHH     EEEEEEEE HHHH   HHHHHHH
SS_SPIDER3:    EEEE  HHHHHHHHHHHHHH     H HH   EEEEEE       EEEEEEEEEE     EEE         E     EEEEEE  HHH    HHHHHHH
SS_PSSPRED:    EEEE  HHHHHHHHHHHHHH   HHHHHH  EEEEEEE     HHHEEEEE                  HHHHHH    EEEEEE HHH    HHHHHHH
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       
BINDING:                                                  E                                                        

                       10        20        30        40        50        60        70        80        90     
AA:            NYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSSMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVM 1000
gnomAD_SAV:     #     L    L    H      R  #    #NSL  C  IR  F  Q      PI  QN  D#S      I  #L     SS  M T  MS       
Conservation:  5667676577799977777667996796775676679799978566988885888866586545544757799999567744545453558576658965
SS_PSIPRED:    HHHHH  EEEE  HHHHHHHHH                                                                              
SS_SPIDER3:    HHHHH   EEE  HHHHHHH                             H                                                  
SS_PSSPRED:    HHHHHH EEEE  HHHHHHHHHH                                                                             
DO_DISOPRED3:                           DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:                         DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:                                                           DDD    DDDDDDDD  DDD      D                 
MODRES_P:                                                             S                                            

                       10        20        30        40        50        60        70        80        90     
AA:            PPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKS 1100
BenignSAV:                                                            V                                            
gnomAD_SAV:      #LS A  * #SR   #Q  L     CRAL R #I  L      F  N   PG V  S    P   SC  TI     R  AF  #          K  L
Conservation:  8645655855825764385522857348445561628234234323436548863367488867668655358688655685555686666879996666
SS_PSIPRED:                                                                                         HH             
SS_SPIDER3:                                                               E                                   HHHH 
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:     D DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DD
MOTIF:                                                                                                 SQ          
MODRES_P:                                                                                              S           
MODRES_M:                        R                                                                                 

                       10        20        3
AA:            QIDVALSQDSTYQGERAYQHGGVTGLSQY 1129
gnomAD_SAV:      E            Q   R R M RP  
Conservation:  64659766657667697688796568666
SS_PSIPRED:       HHH                       
SS_SPIDER3:    H                     E      
SS_PSSPRED:                                 
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   D  DDDDDDDDDDDDDDDDDDDDDD   D
MOTIF:               SQ                     
MODRES_P:            S  S                S