Q969F9  HPS3_HUMAN

Gene name: HPS3   Description: Hermansky-Pudlak syndrome 3 protein

Length: 1004    GTS: 2.152e-06   GTS percentile: 0.707     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


PathogenicSAV: 2      BenignSAV: 11      gnomAD_SAV: 532      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MVQLYNLHPFGSQQVVPCKLEPDRFCGGGRDALFVAAGCKVEAFAVAGQELCQPRCAFSTLGRVLRLAYSEAGDYLVAIEEKNKATFLRAYVNWRNKRTE 100
BenignSAV:                                                         R                                               
gnomAD_SAV:    # H # QY  R## L          S   ## FCM      ATLP#TA D FRLW G     PL C D  QP GCV# LK R R A VC H         
Conservation:  9323322233233324231123213636625365533464344413112314113414243414202122018988666965423268669399822225
SS_PSIPRED:     EEEEE        EE        EEE    EEEEE   EEEEEEE          EEE    HHHHEE     EEEEEEE     EEEEEEEHHH    
SS_SPIDER3:     EEEEE      EE         EEEEE   EEEEEE  EEEEEEEE        EE     HHHEEEE    HEEEEEEE   EEEEEEEEEE E    
SS_PSSPRED:     EEEEE        E        EEE     EEEEE   EEEEEEE          E  HHHHHHHHHH  HHHHEEEEE     EEEEEEE        
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            NSRVCIRMIGHNVEGPFSKAFRDQMYIIEMPLSEAPLCISCCPVKGDLLVGCTNKLVLFSLKYQIINEEFSLLDFERSLIIHIDNITPVEVSFCVGYVAV 200
gnomAD_SAV:     YCMG QV    G R  N   GHHV  V VL L #LFWF  FS  *#  F #ID S  L    R    D    HI*#F  T  ASV S  I  YI  I  
Conservation:  3398579649503333113326676576958635282535794338587866133675928411131222335896426648312314145549224544
SS_PSIPRED:       EEEEEEEE         HH   EEEEE       EEEE      EEEEE  EEEEEEEEEEEE     EE   EEEEEEE     EEEEEE  EEEE
SS_SPIDER3:       EEEEEEEE             EEEEEE      EEEEE      EEEEE  EEEEEEEEEEEE   EEEEEE EEEEEEE  E EEEEEEE  EEEE
SS_PSSPRED:       EEEEEE          HHHHHHEEEEE       EEEE      EEEEE  EEEEEEEEEEE      EEE    EEEEE    EEEEEEE  EEEE
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       
MOTIF:                                                                                LLDFE                        

                       10        20        30        40        50        60        70        80        90     
AA:            MSDLEVLIVKLESGPKNGERVHHHPHKTNNRIRRTEEGISNEISQLESDDFVICQKPLELLGEKSEQSGLSVTLESTGLADEKRKYSHFQHLLYRRFAPD 300
BenignSAV:                                                                               K                         
gnomAD_SAV:    T  SKF  IRP   H   *SI    R  SS*V WA  A N A  R   G    W  L K F       V  LRVKF#  P     C   *   CGC DSG
Conservation:  2366566444511001011010201021011110122201000211512474443353885632420744142481535125011011324685859666
SS_PSIPRED:    EE  EEEEEEEEE                                     EEEE   HHH           EEEEE           EE  HHH      
SS_SPIDER3:    EE  EEEEEEEE                                       EE    HHH  HHHH      EEEE           EE EEEE E    
SS_PSSPRED:    E   EEEEEEEEE                                      EEE   HHH           EEEE            HHHHHHHHH    
DO_DISOPRED3:                  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD    DDDBBDDDDDDDDDDDDDDDDDDDD D                     
DO_SPOTD:                    DDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                                         
DO_IUPRED2A:                    DDDDDDDDDDDDDDDDDD                                                                 

                       10        20        30        40        50        60        70        80        90     
AA:            ISSYVLSDDIKLHSLQLLPIYQTGSLTSDGKNLSQEKELLSLFCFFSLPHVGYLYMVVKSVELMSVYQYPEKSQQAVLTPQFLHVITSNNLQCFTVRCSA 400
PathogenicSAV:                                                                                                 W   
BenignSAV:                            S                                                                            
gnomAD_SAV:     LCF FCE  E R V#VV   P VF R YR TV  K QS NV FS  S# MDCFC       MI A  *T R      M     IVA  K E # MWYIV
Conservation:  3513022643258966648442241001101000123331359797878438769351327344839497754358676337976684336565668656
SS_PSIPRED:               EEEEEEEEEEE                EEEEEEEEE    EEEEEEE   EEEEEEE     EEEEE   EEEEEE     EEEEE  H
SS_SPIDER3:              EEEEEEE EEEEE               EEEEEEEE    EEEEEEE   EEEEEEEE    EEEEEE   E EEE     EEEEEE  H
SS_PSSPRED:              HHHHHHHH  E             HHHHHHHHHHHEE    EEEEEEE   EEEEEE   HHHHHHHH   EEEEE      EEEEE  H
DO_DISOPRED3:                            DDDDDDDDDDD                                                               
DO_SPOTD:                                 DDDDDDDD                                                                 
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            AAAREEDPYMDTTLKACPPVSMDVCALRIQLFIGLKAICHFKNHIILLTKAEPEAIPERRQSPKRLLSRKDTSVKIKIPPVAEAGWNLYIVNTISPVQLY 500
BenignSAV:              V                                             V                                            
gnomAD_SAV:    V VCVK T L    RSGA I T  Y   M       DN QL HNTT        VVLGT #*SQ   L  GA            RC  C    V LL*  
Conservation:  3556125543855255885225348598796998643443342455564374252123232124322235111110212112435976855354344395
SS_PSIPRED:    HHH                    HHH        HHEEEEE  EEEEEE       HHH     HHH                   EEEEEE   HHHHH
SS_SPIDER3:    HHH                  HHHHHHHH H    EEEEEE  EEEEEE       HHHH   HH                    EEEEEE    HHHHH
SS_PSSPRED:    HHHH                    EEHHHHHHHHHHHHHHH  EEEEEE       HHHH                         EEEEEEE   HHHHH
DO_DISOPRED3:                                                        DDDDDDDDDDDDDDDDDDDDDDDDDDD                   
DO_SPOTD:                                                            DDDDDDDDDDDDDDDDDDDDDDDDDDD                   
DO_IUPRED2A:                                                             DDDDD   D                                 

                       10        20        30        40        50        60        70        80        90     
AA:            KEMVDYSNTYKTVKTQSCIHLLSEAHLLVRAALMDASQLEPGEKAELLEAFKESCGHLGDCYSRLDSQHSHLTLPYYKMSGLSMAEVLARTDWTVEDGLQ 600
PathogenicSAV:   I                                                                                                 
BenignSAV:                                                                           Y                  H          
gnomAD_SAV:      LI CN N#  A       F  G    #*   V T E   A#   V KE    # #F  S   F F   Y     C   DSFT    THM  I G    
Conservation:  4886697318231134533888798976665546110000212223521764577338985767323224876999968857534565162210221121
SS_PSIPRED:    HHHHHHHHHH    HHHHHHHHHHHHHHHHHHHH HH     HHHHHHHHHHHHHHHHHHHH       HHHHHHHHHH    HHHHHHHHH        
SS_SPIDER3:    HHHHHHHH      HHHHHHHHHHHHHHHHHHH          HHHHHHHHHHHHHHHHHH      HHHHHHHHHHHH    HHHHHHHHHHH     H
SS_PSSPRED:    HHHHHHHHHH     HHHHHHHHHHHHHHHHHHH        HHHHHHHHHHHHHHHHHHH        HHHHHHHHHHH   HHHHHHHHHH       
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            KYERGLIFYINHSLYENLDEELNEELAAKVVQMFYVAEPKQVPHILCSPSMKNINPLTAMSYLRKLDTSGFSSILVTLTKAAVALKMGDLDMHRNEMKSH 700
BenignSAV:           M                                                                                             
gnomAD_SAV:     CQ#R MS N  *     N   S*  TT   HT   #     RRVF GS V SSTL          G CE LL       E  D  L G H RI  V  L
Conservation:  1453974765263617611509434153253346114540256244455352334611520271133001124334483494356332320131145124
SS_PSIPRED:      HHHHHHHHHHHH     HHH HHHHHHHHHHHHHH HHHHHHHHH HHHH   HHHHHHHHHHHHH    HHHHHHHHHHHHHHH  HHHHHHHHHH 
SS_SPIDER3:    HHHHHHHHHHHHHH     HH  HHHHHHHHHHHHHH HHH  EHE  HHH    HHHHHHHHHHHHH    HHHHHHHHHHHHHH   HHHHHHHHH  
SS_PSSPRED:    HHHHHHHHHHHHHH     HHHHHHHHHHHHHHHHHH HHHH HHHH HHH    HHHHHHHHHHHHH     HHHHHHHHHHHHHH  HHHHHHHHHHH
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            SEMKLVCGFILEPRLLIQQRKGQIVPTELALHLKETQPGLLVASVLGLQKNNKIGIEEADSFFKVLCAKDEDTIPQLLVDFWEAQLVACLPDVVLQELFF 800
BenignSAV:                                                                                                 A       
gnomAD_SAV:      T   Y    D #V  E KE    # K V  F  NRSR  LV # DF NDT# VV GVA  S      EGA  A P       R       AI     L
Conservation:  3641433663175467221111021661551262232356664536575463631545341364173122220155655968852633422314353734
SS_PSIPRED:     HHHHHHHHHH HHHHHH         HHHHHHHHH  HHHHHHHHHHHH     HHHHHHHHHHH       HHHHHHHHHHHHHHHH   HHHHHHHH
SS_SPIDER3:    HHHHHHHHHHH HHHHH        HHHHHHHHHHH HHHHHHHHHHHHH     HHHHHHHHHHH       HHHHHHHHHHHHHHH    HHHHHHHH
SS_PSSPRED:     HHHHHHHHHH HHHHH        HHHHHHHHHHH   HHHHHHHHHHHH    HHHHHHHHHHHH     HHHHHHHHHHHHHHHH    HHHHHHHH
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            KLTSQYIWRLSKRQPPDTTPLRTSEDLINACSHYGLIYPWVHVVISSDSLADKNYTEDLSKLQSLICGPSFDIASIIPFLEPLSEDTIAGLSVHVLCRTR 900
BenignSAV:                                               I                                                      C  
gnomAD_SAV:       L CL*  Y   #L N   Q LDYPR V   H  V   LYII * #P V   F# Y       M           LLS      PV SFI  I  C #
Conservation:  6633295284301102211585444565437266625378512425013111112054438577646646324233363741633230246544487163
SS_PSIPRED:    HHHHHHHHHHH            HHHHHHH                          HHHHHHHHHHH     HHHHHHHHH         EEEEHHH   
SS_SPIDER3:    HHHHHHHHHH             HHHHHHH          HEEE            HHHHHHHHHH      HHHHHHHHH        EEEEEEEEE  
SS_PSSPRED:    HHHHHHHHHHH            HHHHHHHHH        EEEE           HHHHHHHHHHH      HHHHHHHHHH        EEEEEEE  H
DO_DISOPRED3:                                                         D                                            
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            LKEYEQCIDILLERCPEAVIPYANHELKEENRTLWWKKLLPELCQRIKCGGEKYQLYLSSLKETLSIVAVELELKDFMNVLPEDGTATFFLPYLLYCSRK 1000
gnomAD_SAV:     TD     VV  D YRK  S *   KVE V W  G*    #KVY K# YSR*    *  P  K   V     Q   LVS     VI #    C #   *N
Conservation:  4214414531862278364528733553222325783577756517350131211345448344534362342524742437464242564946713424
SS_PSIPRED:       HHHHHHHHHHH HHHHHHHHHHH     HHHHHHHHHHHHHHHHH      HHHHHHHHHHHHHHHHH  HHHHHHH      HHHHHHHHHHHH  
SS_SPIDER3:       HHHHHHHHHHH HHHHHHHHHHH     HHHHHHHHHHHHHHHHH       HHHHHHHHHHHHHHHH  HHHHHH       HHH HHHHHHH   
SS_PSSPRED:    HHHHHHHHHHHHHH HHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHH    HHHHHHHHHHHHHHHHHH  HHHHHHH      HHHHHHHHHHHH  
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                   
AA:            KPLT 1004
gnomAD_SAV:       S
Conservation:  2222
SS_PSIPRED:        
SS_SPIDER3:        
SS_PSSPRED:        
DO_DISOPRED3:    DD
DO_SPOTD:       DDD
DO_IUPRED2A: