Q96FE5  LIGO1_HUMAN

Gene name: LINGO1   Description: Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1

Length: 620    GTS: 1.663e-06   GTS percentile: 0.521     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


PathogenicSAV: 2      BenignSAV: 1      gnomAD_SAV: 242      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MQVSKRMLAGGVRSMPSPLLACWQPILLLVLGSVLSGSATGCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEEL 100
gnomAD_SAV:     # R   M  AM NT   V    E               K    H K F   HT R    H   I KS   K H        MRM S  K VT LQ  D 
Conservation:  4463167223214431224437767794747644965464569479794357679297977412477776477739997797772664779325427739
STMI:          SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS                                                           
SS_PSIPRED:                    HHHHHHHHHHHHHHHHHHH           EEE    EEE                  EEE       EE HHH        EE
SS_SPIDER3:        HHHH        HHHHHHHHHHHHHHHHHHH           EE     EEEEE     E         EEEE    E  EE  HHH       EE
SS_PSSPRED:                     HHHHHHHHHHHHHHHH             EE     EEEE               EEEEE          HHH         E
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                                                  
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                                                     
DO_IUPRED2A:                                                                                                       
DISULFID:                                               C   C C        C                                           

                       10        20        30        40        50        60        70        80        90     
AA:            ELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 200
BenignSAV:                                                                                       F                 
gnomAD_SAV:    D     M T    T  S    QM   HR     V P I               R  T    L   V   R   A N   ICV  CT  S       M   
Conservation:  7779936626979795592477499976939999777997774979297777979999993596795796479797579979747693993599292565
SS_PSIPRED:    E                     EEE                     EEE       EE            EEE                     EEE   
SS_SPIDER3:    E    E  EE            EEE    E EE             EEE    EEEEE            EEEEE     E             EEEE  
SS_PSSPRED:    E                      EE                       E     EEEE  HHH       EEE       EEEHHH              
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       
CARBOHYD:                                                 N                                                        

                       10        20        30        40        50        60        70        80        90     
AA:            CNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 300
PathogenicSAV:                                                                                        C H          
gnomAD_SAV:           A     V S  F   QQ K S  W  C     G      F C C  SV AS        F  V   S  SL    FH   C C    C  SVG
Conservation:  2664269779657774742946537653244767767929961966427629646645595979795957644997279937449757743666979970
SS_PSIPRED:             HHH      EEE                     EEE             HHH     EEE                     EEE       
SS_SPIDER3:        E     HH      EEEE    HHH     H       EEE       H     HH      EEE       E   H         EEE       
SS_PSSPRED:           HHHHHH     EEEE      H HHHHHHH     EEE           HHHHH     EEE          HHHHH      EEE       
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       
CARBOHYD:       N                                                             N         N                  N       

                       10        20        30        40        50        60        70        80        90     
AA:            TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE 400
gnomAD_SAV:        F  R   Q       #RH  ML S V CSVSC #M  I R   P V      LL  V   L N  # V         #   W T  Q   M TM K
Conservation:  3766436239567644494775712797669677459667977290936779649776777769364297979999769797997997767499294493
SS_PSIPRED:                  EEE       EE            EEE                     EEE          EEHHHHH HHH        EE   H
SS_SPIDER3:    E    H        EEEEE  EEEEE   H        EEE       H   HHH       EEEE         HHHHHHHHH          EE   H
SS_PSSPRED:         HHH HHH  EEEE    EEEE HHH        EEE          HHHH      EEEE            HHHHHHHHH             H
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       
DISULFID:                                                                              C C                    C    
CARBOHYD:                                              N                                                           

                       10        20        30        40        50        60        70        80        90     
AA:            FVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAA 500
gnomAD_SAV:    LLR    R     P  K    H##S LEHRT K      Y MR   QTN NLL S    A L     S    ##          C T   N  M    # 
Conservation:  2547659777762753349392474626224322469994771709175759192537257562377275167557306959967779479997909694
SS_PSIPRED:    HH    HHH  HHH          EE      EEEE     EEEEEEEE     EEEEE    EEE       EEE     EEEE   HHH EEEEEEEE
SS_SPIDER3:    HH   EHHH  HHH     E    E        EEE    EEEEEE E      EEEEE    EEE      EEEE     EEEEE  E H EEEEEEEE
SS_PSSPRED:    HH                               EEE    EEEEEEEE       EEEE    EEE      EEEE    EEEEEEEEEE   EEEEEEE
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       
DISULFID:                          C                        C                                                  C   
CARBOHYD:                                                                                                 N        

                       10        20        30        40        50        60        70        80        90     
AA:            NAGGNDSMPAHLHVRSYSPDWPHQPNKTFAFISNQPGEGEANSTRATVPFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGNTKHNIEIEYVPR 600
gnomAD_SAV:    SV C   TRTQ R C  LS         L    # RA   DSG HD  A   N      T  I                    Q         Q     Q
Conservation:  9979997127594767979576354967777739792722293941226979957997799999999997999999779999999966374697697999
STMI:                                                                       MMMMMMMMMMMMMMMMMMMMM                  
SS_PSIPRED:         EEE EEEEEE            EEEEEE                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH         EEEEEE  
SS_SPIDER3:        EEEEEEEEEEEE           EEEEE                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHH         EEEEEEEE 
SS_PSSPRED:            EEEEEEE             EEEE                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHH         EEEEEE  
DO_DISOPRED3:                               DDDDDDDDDDDDDDD                                                    D   
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                              DDD DDDD       D                                                 D       
CARBOHYD:          N                    N               N                                                          

                       10        20
AA:            KSDAGISSADAPRKFNMKMI 620
gnomAD_SAV:         VG TNVL    VR  
Conservation:  52625133264544656644
SS_PSIPRED:                 EEE    
SS_SPIDER3:                E E     
SS_PSSPRED:                    EE  
DO_DISOPRED3:  DDDDDDDDDDDDDDDDD   
DO_SPOTD:        DDDDDDDDDDDD DDDDD
DO_IUPRED2A:                       
MODRES_P:       S