Q9BWH6  RPAP1_HUMAN

Gene name: RPAP1   Description: RNA polymerase II-associated protein 1

Length: 1393    GTS: 1.659e-06   GTS percentile: 0.519     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


      BenignSAV: 7      gnomAD_SAV: 699      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNRGGGDANSDRPPLQDHRDVVMLDNLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRHDQ 100
BenignSAV:       L                                                                                                 
gnomAD_SAV:    T W L  E A        NH  T RV       RE  S#SC    NLTL    W MMI  SP HF     A#T  T SL      L  GGSG   K   E
Conservation:  7629857556828684482386344325662435543541311111111010079593623568249393847396562211132423483542631383
SS_PSIPRED:              HHHHHHHHHHHHH       EEEE                                                        HHHHHHHHHH
SS_SPIDER3:              HHHHHHHHHHHHH      EEEE                                                         HHHHHH    
SS_PSSPRED:              HHHHHHHHHHHHHH    EEEEEEE                                                       HHHHHHH   
DO_DISOPRED3:  DDDDDDDDDDDDDDD DDDDDDDDD     DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDD         DDDDD     DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDD         DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
MODRES_P:                                                                             S                            

                       10        20        30        40        50        60        70        80        90     
AA:            HITAVLTKIIERDTSSVAVNLPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAARRIAEAKGPSVGEVVPNVGPPEGAVTCETPTPRNQGCQLPGS 200
BenignSAV:                                                                     M                                   
gnomAD_SAV:      P  FS    QV   M M P LAGD#  LT   HLWV      A   K VS    V  K  D M T A  F   MD  * VMPF  LSA S RY*P  N
Conservation:  8767964786969762225239235417993545753112212211256878855477551231111100020101101011010010010001010112
SS_PSIPRED:    HHHHHHHHH                                         HHHHHHHHHHHHHH                                    
SS_SPIDER3:     HHHHH                        HHH H               HHHHHHHHHHHHHH                                    
SS_PSSPRED:     HHHHHH                                           HHHHHHHHHHHHHH                                    
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDD       DD  DDD       DDDDDDDDDDDDDDDDDDDDD      D     DDD DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            SHSFQGPNLVTGKGLRDQEAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETASEEQRPGGPSANVTKEEPLMSAFA 300
gnomAD_SAV:    R   E      #   S  K  RKT  T  G       V  Q       WV  #   RF VV  TPR R   AEQI      S  L VIDS    P TS  
Conservation:  1011126165582781111311833398388316734732366336622843685735637667320001111111110111110100011110001101
SS_PSIPRED:                    HHHHHHHHHHHHHHHHHHHHH  HHHHHHHHHHHHHH  HHHHHHHHH                                    
SS_SPIDER3:                     HHHHHHHHH HHHHHHHHH   HHHHHHHHHHHH    HHHHHHHH                                     
SS_PSSPRED:                       HHHHHHHHHHHHHHHHHH  HHHHHHHHHHHHHH  HHHHHHHHHH                                   
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                         DD     DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD    D    DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            SEPRKRDKLEPEAPALALPVTPQKEWLHMDTVELEKLHWTQDLPPVRRQQTQERMQARFSLQGELLAPDVDLPTHLGLHHHGEEAERAGYSLQELFHLTR 400
gnomAD_SAV:    N     V  K  TL  T LLS   Q P    I M# I  IR M   QQR IE  L  Q N      VT M  S Q     #      VA    K LY AC
Conservation:  1101131011112221167436275967953493799394467824543363528699957292863532659876999999576959997879694958
SS_PSIPRED:                                     HHH                           EE                   HHH    HHHHHHHHH
SS_SPIDER3:                          HHHH      HHH                 H  E EEEEEEEE              E           HHHHHHHH 
SS_PSSPRED:                          HHHH      HHHH               HHHHH  E    EEE                         HHHHHHHHH
DO_DISOPRED3:  DDDDDDDDDDDDDDDDD                  D    DDDDDDDDDDDDDD              DDD DD                          
DO_SPOTD:      DDDDDDDDDDDDDDDDD                                                                                   
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDD              DDDDDDDDDDDDDDDDDD  DD            DDD DDDD D DD                
MODRES_P:                          T                                                                               

                       10        20        30        40        50        60        70        80        90     
AA:            SQVSQQRALALHVLAQVISRAQAGEFGDRLAGSVLSLLLDAGFLFLLRFSLDDRVDGVIATAIRALRALLVAPGDEELLDSTFSWYHGALTFPLMPSQED 500
BenignSAV:                                 Q                                                                       
gnomAD_SAV:    C*    T    P        S*      W  ST    F   D FL  HL        G  AS CTFWT    S   G  N#   * R   M     R   
Conservation:  9443888287626843761574363712261455423889995699899669925547455543574489842289438904849539312676391033
SS_PSIPRED:       HHHHHHHHHHHHHHHHH             HHHHHH   HHHHHHHHH    HHHHHHHHHHHHHHH     HHHHHHH                  
SS_SPIDER3:       HHHHHHHHHHHHHHHHHHH      H HHHHHHHHHH  HHHHHHHHH    HHHHHHHHHHHHHH      HHHHHH EE    EEEE        
SS_PSSPRED:    HHHHHHHHHHHHHHHHHHHHHH         HHHHHHHHH  HHHHHHHHH     HHHHHHHHHHHHHH     HHHHHHH                  
DO_DISOPRED3:                                                                                                     D
DO_SPOTD:                                                                                                       DDD
DO_IUPRED2A:                                                                                                  DDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            KEDEDEDEECPAGKAKRKSPEEESRPPPDLARHDVIKGLLATSLLPRLRYVLEVTYPGPAVVLDILAVLIRLARHSLESATRVLECPRLIETIVREFLPT 600
BenignSAV:          K                                                                           G                  
gnomAD_SAV:      NKNKN   S     KR    *#W QR   #    #    NG   # H LP       TM  HT     C  W   *   T   YSQ    V Q C   
Conservation:  4545443210122421121143215453567429459959574464959868982493615543451575545989234425663888653554348573
SS_PSIPRED:                 HH            HHHHHHHHHHHHHH  HHHHHHHHHHH    HHHHHHHHHHHHHHHH  HHHHHHHHH HHHHHHHHHHH   
SS_SPIDER3:                               HHHHH HHHHHHHH   HHHHHHHH      HHHHHHHHHHHHHHH H HHHHHHHH  HHHHHHHHHHH   
SS_PSSPRED:                               HHHHHHHHHHHHHHHHHHHHHHHHHHH    HHHHHHHHHHHHHHHHH HHHHHHHHH HHHHHHHHHHH   
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDD                                                                         
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDD                                                                           
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            SWSPVGAGPTPSLYKVPCATAMKLLRVLASAGRNIAARLLSSFDLRSRLCRIIAEAPQELALPPEEAEMLSTEALRLWAVAASYGQGGYLYRELYPVLMR 700
gnomAD_SAV:    RC  G  E  AT  #   V TL  FCF   #   TV WM     FQNH  H    V      LR  V    SK  L *   PFC  DSDF    S    W
Conservation:  2913121222143532733176974975635765256555533223337356454361563820267314338547685656387755268358974842
SS_PSIPRED:                     HHHHHHHHHHHHHH HHHHHHHH    HHHHHHHHHH   HHH   HHHHHHHHHHHHHHHHHHHH    HHHHHHHHHHHHH
SS_SPIDER3:                     HHHHHHHHHHHHH  HHHHHHHH    HHHHHHHHH          HHHHHHHHHHHHHHHHHHHH     HHHHHHHHHHHH
SS_PSSPRED:                    HHHHHHHHHHHHHHH HHHHHHHHHH HHHHHHHHHHH         HHHHHHHHHHHHHHHHHHHHH    HHHHHHHHHHHH
DO_DISOPRED3:     DDDDDDDDDDD                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                  D                                    

                       10        20        30        40        50        60        70        80        90     
AA:            ALQVVPRELSTHPPQPLSMQRIASLLTLLTQLTLAAGSTPAETISDSAEASLSATPSLVTWTQVSGLQPLVEPCLRQTLKLLSRPEMWRAVGPVPVACLL 800
gnomAD_SAV:    T    LW    PS  R  L Q   QRS        VS  S      Y  T# L SS   S I   AR     L    I    P       M   SI * S
Conservation:  2663330111122100413352254336743564564121122141012212122463629257465343532277225305212113012237235453
SS_PSIPRED:    HHHHHHHHH      HHHHHHHHHHHHHHHHHHHHH    HHH    HHHH         HHHHH HHHHHHHHHHHHHHH   HHHHHHH HHHHHHHH
SS_SPIDER3:    HHHHHHHH       HHHHHHHHHHHHHHHHHHHH     HHH    HHH          HHHHH  HHHHHHHHHHHHHH   HHHHHH   HHHHHHH
SS_PSSPRED:    HHHHHHHH       HHHHHHHHHHHHHHHHHHHHH                        HHHHHHHHHHHHHHHHHHHHHH  HHHHHHH  HHHHHHH
DO_DISOPRED3:                                            DDDDDDDDDDD                                               
DO_SPOTD:                                                  DDDDDDDDD                                               
DO_IUPRED2A:                                               DDDD                                                    

                       10        20        30        40        50        60        70        80        90     
AA:            FLGAYYQAWSQQPSSCPEDWLQDMQRLSEELLLPLLSQPTLGSLWDSLRHCSLLCNPLSCVPALEAPPSLVSLGCSGGCPRLSLAGSASPFPFLTALLSL 900
BenignSAV:                             E                                                                           
gnomAD_SAV:      ET  *     LN FL  *I   KH  K#      G A    PC F KRR     L  RM     S#NIM    T    HFI GS   R  L   F F 
Conservation:  7434692233392233644475748183223737852314312522264249349531322223623177438342422111453432678654556317
SS_PSIPRED:    HHHHHHHHHHH     HHHHHHHHHHHHHHHHHHHH  HHHHHHHHHHHH HHHH  HH                               HHHHHHHHHH
SS_SPIDER3:    HHHHHHHHHH      HHHHHHHHHHHHHH  HHHH  HHHHHHHHHHH   HH                            E       HHHHHHHHHH
SS_PSSPRED:    HHHHHHHHHHH     HHHHHHHHHHHHHHHHHHHH   HHHHHHHHHHHHHHHH                                    HHHHHHHHH
DO_DISOPRED3:                                                            DDDDDDDDDDDDDDDDD                         
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            LNTLAQIHKGLCGQLAAILAAPGLQNYFLQCVAPGAAPHLTPFSAWALRHEYHLQYLALALAQKAAALQPLPATHAALYHGMALALLSRLLPGSEYLTHE 1000
gnomAD_SAV:             RM V P T  T  E R CL #RMVLRTS YV       PC         VT    VVV    S  R  FC  LT   PRWPP RN    R 
Conservation:  4335213976731543145022361196125212132514332349364793666634616516342113112124464814654573468986754535
SS_PSIPRED:    HHHHHHH HHHHHHHHHHHH HHHHHHHHHHH         HHHHHHHHHHHHHHHHHHHHHHHHHH     HHHHHHHHHHHHHHHHH     HHHHHH
SS_SPIDER3:    HHHHHHH  HHHHHHHHHH    HHHHHHHH           HHHHHH HHHHHHHHHHHHHHHHHH      HHHHHHHHHHHHHHHH     HHHHHH
SS_PSSPRED:    HHHHHHHHHHHHHHHHHHHH HHHHHHHHHHH         HHHHHHHHHHHHHHHHHHHHHHHHHHH    HHHHHHHHHHHHHHHHH     HHHHHH
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            LLLSCVFRLEFLPERTSGGPEAADFSDQLSLGSSRVPRCGQGTLLAQACQDLPSIRNCYLTHCSPARASLLASQALHRGELQRVPTLLLPMPTEPLLPTD 1100
gnomAD_SAV:       N   Q    L    ED  V GV  * L R NS #L E     T T EE  N CSY VSY LS QV   TF    Q  I Q  S    VAM L   NN
Conservation:  6421248332545821176675445462926121002012272882364148646536754452323325118521424332252526972326537749
SS_PSIPRED:    HHHHH   HHH             HHHHHH           HHHHHHHHHH HHHHHHH HH     HHHHHHHHHH                       
SS_SPIDER3:    HHHHH    HH         HH HHHHH            HHHHHHHHH   HHHHHHHHH     HHHHHHHHHHH          E            
SS_PSSPRED:    HHHHHHH HHH             HHHHH            HHHHHHHHHH  HHHHHHH      HHHHHHHHHHHH                      
DO_DISOPRED3:                   DDDDDDDDDDDDDDDDDDDDDDDD  D                      DDDDDDDDDDDDD                     
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                         DDD                                                                           

                       10        20        30        40        50        60        70        80        90     
AA:            WPFLPLIRLYHRASDTPSGLSPTDTMGTAMRVLQWVLVLESWRPQALWAVPPAARLARLMCVFLVDSELFRESPVQHLVAALLAQLCQPQVLPNLNLDCR 1200
BenignSAV:            G                                                                                            
gnomAD_SAV:     L  L  H *QWT G  L FT I# ##  TQF  *L   D *C  #   L  P H  W   MLV N K  Q CSI## LT   T V        F  H #
Conservation:  9485986399543402132125133411332398859578378323712443585678847479364579691376143358521554121422829425
SS_PSIPRED:     HHHHHHHHHHH          HHHHHHHHHHHHHHHHHHHH HHHHH   HHHHHHHHHHHHH   HHH  HHHHHHHHHHHHHH              
SS_SPIDER3:    H HHHHHHHHHH           HHHHHHHHHHHHHHHHHH   HHH    HHHHHHHHHHHHH   HH    HHHHHHHHHHHHH              
SS_PSSPRED:        HHHHHHHH            HHHHHHHHHHHHHHHHHHHHHHHHH  HHHHHHHHHHHHH   HHH   HHHHHHHHHHHHHH             
DO_DISOPRED3:                DDDDDDDD                                                                              
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                    DDDDD D                                                                            
MODRES_P:                          S                                                                               

                       10        20        30        40        50        60        70        80        90     
AA:            LPGLTSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGALRALSLPLTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRPRW 1300
gnomAD_SAV:     RS S#LSYFF K  N    I        #    T  H# N# SC    A  M # #    L IK      Y A  L    T FH  VWSRFIVV C C*
Conservation:  5696599398823683778699898299635597998647443573459886462966946542455555426419494651782587449555494215
SS_PSIPRED:          HHHHHHHHHHHHHHHH   HHHHHHHHHHHHH   HHHHHHHHHHHHHHHHH    HHH    HHH        HHHHHHHHHHHHH       
SS_SPIDER3:          HHHHHHHHHHHHHHHH   HHHHHHHHHHH     HHHHHHHHHH HHHHHH    HHH    HHH        HHHHHHHHHHHH        
SS_PSSPRED:          HHHHHHHHHHHHHHHH  HHHHHHHHHHHHH    HHHHHHHHHHHHHHHHHH          HHH        HHHHHHHHHHHHH       
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90   
AA:            CPVLYAVAVAHVNSFIFSQDPQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNSTLPEGFELYSQLPPLRQHYLQRLTSTVLQNGVSET 1393
gnomAD_SAV:    Y M  P      S L     T   #     H T  PE *P T    #    QC   IAA L S    T#  # H     K I AGV I A   
Conservation:  896894874486738485832032432335333594542382661862868465342112218733622972393237313211000110102
SS_PSIPRED:     HHHHHHHHHHHHHHHH       HHHHHHHHHHHHHHHHH  HHHHHHHHH            HHH    HHHHHHHHHHHHHHHH      
SS_SPIDER3:     HHHHHHHHHHHHHHHH       HHHHHHHHHHHHHHHH   HHHHHHHH            H       HHHHHHHHHHH HH        
SS_PSSPRED:     HHHHHHHHHHHHHHH        HHHHHHHHHHHHHHHHH  HHHHHHHHHH                 HHHHHHHHHHHHH          
DO_DISOPRED3:                            DD DDDDDD                         DD                     DDDDDDDDDD
DO_SPOTD:                                                                                            DDDDDDD
DO_IUPRED2A:                              D