Q9BXS0  COPA1_HUMAN

Gene name: COL25A1   Description: Collagen alpha-1(XXV) chain

Length: 654    GTS: 1.023e-06   GTS percentile: 0.234     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


PathogenicSAV: 1      BenignSAV: 2      gnomAD_SAV: 303      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MLLKKHAGKGGGREPRSEDPTPAEQHCARTMPPCAVLAALLSVVAVVSCLYLGVKTNDLQARIAALESAKGAPSIHLLPDTLDHLKTMVQEKVERLLAQK 100
gnomAD_SAV:    I V  DG    VGDS   HTI VKKL S I  Q    VVF  LM M#F  CQS    V R    TF     SLFVNP  N# E  N #  GQ K*     
Conservation:  1111111111111111111111111111111100121112121032113111102100110230002000111111111100210011020021014020
STMI:                                           MMMMMMMMMMMMMMMMMMMMM                                              
SS_PSIPRED:            EE            HHHHHHHH  HHHHHHHHHHHHHHHHHHHH   HHHHHHHHHHHH                HHH       HHH    
SS_SPIDER3:           EEEEE          HHHHHH    HHHHHHHHHHHHHHHH       HHHHHHHHH                    HHH     HHH     
SS_PSSPRED:        EE                HHHHHHHH  HHHHHHHHHHHEEEEEE       HHHHHHHHHH                                  
DO_DISOPRED3:  DDD    D                           DDD D                                       DD  DDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD             DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:      DDDDDDDDDDDDDDDDDDDDDDDDD                                  DDDDD  DD  DDDDDDDDDDDDD  DDD DD DD   

                       10        20        30        40        50        60        70        80        90     
AA:            SYEHMAKIRIAREAPSECNCPAGPPGKRGKRGRRGESGPPGQPGPQGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPP 200
gnomAD_SAV:     CG  T L  T   L  Y   G     Q E  Q  KT LL H  L  SR  ES# A H     MV   E S   FYG     EH# L  E   T LL HS
Conservation:  1011011120111101130211211412211301420413111111534633644523841473112312113332222121111146543632767755
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDD   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD D   
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:       D DDD   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
REGION:                                                                                        LIKRRLIK            
SITE:                     RE                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            GPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLGPPGQKGSIGAPGIPGMNGQKGEPGLPGAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTG 300
BenignSAV:                                    D                                                                    
gnomAD_SAV:      A  SRSA  K     C KS   V L    A  SI   WSL     V SS       K   S F    A    S        P     T   V   Y  
Conservation:  4148345625215344434114015218015016011111111111111111111111111111111111111111111111117119238111124111
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:            D DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            EKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGERGEAGPPGRGERGEPGAPGPKGKQGESGTRGPKGSKG 400
PathogenicSAV:                                                                                  R                  
gnomAD_SAV:    K  NT*    R TV   QYDC   QR RE       LR    L  T       I       # #RKT  T    Q    # RSQ E A          N 
Conservation:  1111111111111514122411901701603824732413533601811432823612611111111111111111111111111111111111111167
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            DRGEKGDSGAQGPRGPPGQKGDQGATEIIDYNGNLHEALQRITTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGLKGSKGDMGDPGMTGEKGGIG 500
BenignSAV:                                  G                                                                      
gnomAD_SAV:    NLR    T  EE    RA*  N ETNG #G  # IRKT  M     LMC A L   ER K    Q        V# Q    A    L    T    VE  
Conservation:  5191181090072272482671241232343323311244111114345548236117014028508114245135138136215209028116266327
SS_PSIPRED:                                        HHH                                                             
SS_SPIDER3:                                        H                                                               
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDD DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            LPGLPGANGMKGEKGDSGMPGPQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGTDGPMGPHGPAGPKGERGEKGAMGEPGPRGPYGLPGKDGEPGLDGFP 600
gnomAD_SAV:        LAVS   RD     LLC RD  V      L  R #S    R   S       S   R  S T    CK  TV  R Q  LC     Y  RR   S 
Conservation:  3372241251694483141111352332645934923843622622724724721811811922811912930721646736624531111524525634
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50    
AA:            GPRGEKGDLGEKGEKGFRGVKGEKGEPGQPGLDGLDAPCQLGPDGLPMPGCWQK 654
gnomAD_SAV:     AWC  C  #   K R C I  A      R  E  Y       GD LVSDY HN
Conservation:  521534620312643424512523613542333253232111111200111001
SS_PSIPRED:                                                          
SS_SPIDER3:                                                          
SS_PSSPRED:                                                          
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDD       D DD     D       
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD