Q9NPB8  GPCP1_HUMAN

Gene name: GPCPD1   Description: Glycerophosphocholine phosphodiesterase GPCPD1

Length: 672    GTS: 1.307e-06   GTS percentile: 0.359     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


      BenignSAV: 1      gnomAD_SAV: 246      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MTPSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGVSVQYRYFKGYFLEPKTIGGPCQVIVHKWETHLQPRSIT 100
gnomAD_SAV:     KSP FV   KE        V     VDF    S     FIQQ G   RK     V     I      #R   S   SV#       R   S    *  I
Conservation:  2113133423341302864384794412581923508429120222111016322406115111088863515445652465489674298564358342
SS_PSIPRED:       EEEEEEEE       EEEEEE  HHH    HHH EE EE        EEEEEEEE    EEEEEEEEEEEE         EEEEEEE          
SS_SPIDER3:        EEEEEEE       EEEEEE  HHH    H   EEEEE        EEEEEEEE    EEEEEEEEEEE  E       EEEEEE       EE  
SS_PSSPRED:        EEEEEEEE     EEEEEEE HHHH       EEE          EEEEEEEEE    EEEEEEEEEEEE         EEEEEEE          
DO_DISOPRED3:  D                                                                                                   
DO_SPOTD:      D                                                                                                   
DO_IUPRED2A:                                                                                                       
BINDING:                                                                            K                              
REGION:                                                                                               HK           

                       10        20        30        40        50        60        70        80        90     
AA:            PLESEIIIDDGQFGIHNGVETLDSGWLTCQTEIRLRLHYSEKPPVSITKKKLKKSRFRVKLTLEGLEEDDDDRVSPTVLHKMSNSLEISLISDNEFKCRH 200
gnomAD_SAV:        KF   NE     DD   V  R   RH     C R          RR F          V     H NG AFR   DQIAS    P VRNS      
Conservation:  4442111385508832452224738585686766876638113963659535958889587464928676640124220243244665746521335668
SS_PSIPRED:                      EEEE         EEEEEEE      EEEE       EEEEEEEE              HH      EEEEEEE        
SS_SPIDER3:      H                EEE         EEEEEE       EEEE        EEEEEEE              H       EEEEEE      E  
SS_PSSPRED:                                  EEEEEEE        EE HHH     EEEEEE                       EEEEEE         
DO_DISOPRED3:                                                                    DDDDDDDDDDDDDDDDDDDDDDD DDDD DDD D
DO_SPOTD:                                                                          DD                              
DO_IUPRED2A:                                                                          D DD D                       
MODRES_P:                                                                                S                         

                       10        20        30        40        50        60        70        80        90     
AA:            SQPECGYGLQPDRWTEYSIQTMEPDNLELIFDFFEEDLSEHVVQGDALPGHVGTACLLSSTIAESGKSAGILTLPIMSRNSRKTIGKVRVDYIIIKPLPG 300
BenignSAV:                                                                             I                           
gnomAD_SAV:      L SV V     R  H V M             K      I#HD V        Y  P  VV      E  I   #    W              #SQA
Conservation:  6797696583324948637466596878938676585663355458359935845556643519155317345979848348675989699766669504
SS_PSIPRED:                  EEEEEEE      EEEEEEEE                EEEEEEE           EEEEEEEE        EEEEEEEEEEE    
SS_SPIDER3:          E      EEEEEEEE      EEEEEEEE E    EE        EEEEEEE   E       EEEEEEEE      EEEEEEEEEEEEEE   
SS_PSSPRED:                 EEEEEEE       EEEEEEEEE              EEEEEEEE           EEEEEEE         EEEEEEEEEE     
DO_DISOPRED3:  D                                                                                                   
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                               D                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            YSCDMKSSFSKYWKPRIPLDVGHRGAGNSTTTAQLAKVQENTIASLRNAASHGAAFVEFDVHLSKDFVPVVYHDLTCCLTMKKKFDADPVELFEIPVKEL 400
gnomAD_SAV:     I YV Y  FTC     LS        K A  TR     ADAVD   KGV     L  C I        MAC       A     G          L D 
Conservation:  3145520454866366246599899699552534536566666365335514777799999577591797799999965359680211323559779969
SS_PSIPRED:                                    HHHH      HHHHHHHHH    EEEEEEEE     EEEE   EEEEE                HHH 
SS_SPIDER3:                                   HHHH       HHHHHHHHH    EEEEEEEEE    EEEE   EEEEE          H     HHH 
SS_PSSPRED:            HHH                       HHHHHH HHHHHHHHHHH   EEEEEEEE      EE                         HHHH
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                          D     DDDD                                                                   

                       10        20        30        40        50        60        70        80        90     
AA:            TFDQLQLLKLTHVTALKSKDRKESVVQEENSFSENQPFPSLKMVLESLPEDVGFNIEIKWICQQRDGMWDGNLSTYFDMNLFLDIILKTVLENSGKRRIV 500
gnomAD_SAV:     SGK        EI      Q# F #   SFV* SH     E#  QF          V  L P  VRT N   #       S G V N  V  YE   M 
Conservation:  8656956886373566311313231035521326488996833673247416878996985483746286647467768803685673355235519876
SS_PSIPRED:     HHHHHH                                 HHHHHHH     EEEEEEE                   HHHHHHHHHHHHHH      EE
SS_SPIDER3:     HHHHHH     HH                          HHHHHH      EEEEEEE                   HHHHHHHHHHHHHHH     EE
SS_PSSPRED:     HHHHHHH                                HHHHHHH      EEEEE                   HHHHHHHHHHHHHHHH     EE
DO_DISOPRED3:           DDDDDDDDDDDDDDDDDDDDD                                                                      
DO_SPOTD:                  DDDDDDDDDDDDDDDDDDDDD                                                                   
DO_IUPRED2A:                             D DD                                                                      
MODRES_P:                             S                                                                            

                       10        20        30        40        50        60        70        80        90     
AA:            FSSFDADICTMVRQKQNKYPILFLTQGKSEIYPELMDLRSRTTPIAMSFAQFENLLGINVHTEDLLRNPSYIQEAKAKGLVIFCWGDDTNDPENRRKLKE 600
gnomAD_SAV:       L#     V #   S  L     R#    F        #  AT K  VR         L  #  G #  S Q    R L    S     S D K    
Conservation:  8979569796568499998968999692511886698485646255568856645697656566683350371283647974859964696435932873
SS_PSIPRED:    EEE  HHHHHHHHHH     EEEEE       HHH       HHHHHHHHHH    EEEE HHHHH  HHHHHHHHH   EEEE       HHHHHHHHH
SS_SPIDER3:    EE   HHHHHHHHHH     EEEEE       H         HHHHHHHHHH    EEEE HHHHHH HHHHHHHHH   EEEEE      HHHHHHHHH
SS_PSSPRED:    EE   HHHHHHHHHHH    EEEEE       HHH       HHHHHHHHHHH    EEE HHHH   HHHHHHHHHH  EEEE       HHHHHHHHH
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                 DD    

                       10        20        30        40        50        60        70  
AA:            LGVNGLIYDRIYDWMPEQPNIFQVEQLERLKQELPELKSCLCPTVSRFVPSSLCGESDIHVDANGIDNVENA 672
gnomAD_SAV:    V A R    K   *I     M     W C R              N#  SL#   #F TRM   D  KM  G
Conservation:  176586778475512155333433521316222353433326422223121216011000011211230111
SS_PSIPRED:        EEE   HHHH        HHHHHHHHHHHHHHHH                                  
SS_SPIDER3:        EEEE  HHHH      HHHHHHHHHHHHHHHHH                      E        HHHH
SS_PSSPRED:    H   EEEE  HHHHH      HHHHHHHHHHHHHHHHHH                                 
DO_DISOPRED3:                        DBBDDDDBDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:                               DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:                                                                          D
MODRES_P:             Y