Q9NPG4  PCD12_HUMAN

Gene name: PCDH12   Description: Protocadherin-12

Length: 1184    GTS: 1.535e-06   GTS percentile: 0.464     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


      BenignSAV: 16      gnomAD_SAV: 638      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MMQLLQLLLGLLGPGGYLFLLGDCQEVTTLTVKYQVSEEVPSGTVIGKLSQELGREERRRQAGAAFQVLQLPQALPIQVDSEEGLLSTGRRLDREQLCRQ 100
BenignSAV:                                                           G                                             
gnomAD_SAV:    T       P   WT     F R#R A  SVM   #MAG M# CAMNR  PRQPSQD  WGK# T IH  ERS EPSV AEP DR F    G  PK   LR
Conservation:  4112312121313221132203022312332437451875418826828422322123030123164442121156515212492626135699919922
STMI:          SSSSSSSSSSSSSSSSSSSSSSSS                                                                            
SS_PSIPRED:     HHHHHHHH   HHHHHHHHHHHHHHHHHHH             EEEHHHHHH   HHH      EEEE       EEE     EEEE     HHHHH  
SS_SPIDER3:       HHHHHH   HHHHHHHHHHHHHHHHH  EEEE         EEE HHHH    HHH H    EEEE       EEE     EEEE     HHHH   
SS_PSSPRED:      HHHHHHH    HHHHHEHHHH       EEEEEEE       EEEEHHHHH   HHHH     EEEE       EE       EE      HHHHH  
DO_DISOPRED3:  BBBBBBBBBBBBBBBBBBBBDDDDDDDD                                                                        
DO_SPOTD:      DDDDDDDDD                                                                                           
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            WDPCLVSFDVLATGDLALIHVEIQVLDINDHQPRFPKGEQELEISESASLRTRIPLDRALDPDTGPNTLHTYTLSPSEHFALDVIVGPDETKHAELIVVK 200
BenignSAV:                                                                                           S             
gnomAD_SAV:     #TY L  N F I E#      T   EVS YHAQ   DKRQM V  IT  Q QV # S   L KS  I R  I FR #PC FN T D       K   L 
Conservation:  1429342737731212146472547494997291943224559679363725788964919484728452293873727939552123353546795646
SS_PSIPRED:        EEEEEEEE    EEEEEEEEEE             EEEEEE                         EEEE     EEEEEEE     EEEEEEEE 
SS_SPIDER3:       EEEEEEEEEE  EEEEEEEEEEE             EEEEEEE      E E               EEE      EEEEEEE     EEEEEEE  
SS_PSSPRED:        EEEEEEEEE  EEEEEEEEEEEEE           EEEEEEE                                  EEEE         EEEEEEE
DO_DISOPRED3:                              BBDDDBDBDD                                                            DD
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                      DDDDDDDD           DDDDDDDDD DDDDDDDDD           D               

                       10        20        30        40        50        60        70        80        90     
AA:            ELDREIHSFFDLVLTAYDNGNPPKSGTSLVKVNVLDSNDNSPAFAESSLALEIQEDAAPGTLLIKLTATDPDQGPNGEVEFFLSKHMPPEVLDTFSIDAK 300
BenignSAV:                                                                 M                 A    G                
gnomAD_SAV:      G     CSN      NH  TH *        I  #     V  A   P D#   V S M  M   T # NP #S  A    G R A  APN YTT   
Conservation:  5799923235383748292927558953263627798999892933332363519751398265272949796949967474565522236313826443
SS_PSIPRED:            EEEEEEEEEE       EEEEEEEEEE            EEEEEEE       EEEEEEEE       EEEEEEE     HHHHHHEEE   
SS_SPIDER3:            EEEEEEEEEE  E  EEEEEEEEEEEE            EEEEEEE      EEEEEEE         EEEEEEEE    HHHHHHEEE   
SS_PSSPRED:            HHHEEEEEEE         EEEEEEEEE            EEEEEE      EEEEEEE          EEEEEE     HHHHH  EE   
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                            DDDDDDDD            DD D              DDDDDDD      DDDDD                   

                       10        20        30        40        50        60        70        80        90     
AA:            TGQVILRRPLDYEKNPAYEVDVQARDLGPNPIPAHCKVLIKVLDVNDNIPSIHVTWASQPSLVSEALPKDSFIALVMADDLDSGHNGLVHCWLSQELGHF 400
BenignSAV:                                                                                         N               
gnomAD_SAV:        T C*   C   A *K GI   H  LI NL  F #  NL           I RV  S    A F R     FL  G   *RN  F RSCVR G   C
Conservation:  4814261228959121467636773939685584774546463968983936233743114253934325676578442949781772614161231359
SS_PSIPRED:      EEEE          EEEEEEEEE         EEEEEEEEE       EEEEEE               EEEEEEEE        EEEEEE       
SS_SPIDER3:      EEEE          EEEEEEEEEE       EEEEEEEEEEE      EEEEEE     E         EEEEEEEE         EEEEE      E
SS_PSSPRED:      EEEE           EEEEEEEE         EEEEEEEEEEEE     EEEEE              EEEEEEE           EEEEE       
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                       D DDD                                                                           

                       10        20        30        40        50        60        70        80        90     
AA:            RLKRTNGNTYMLLTNATLDREQWPKYTLTLLAQDQGLQPLSAKKQLSIQISDINDNAPVFEKSRYEVSTRENNLPSLHLITIKAHDADLGINGKVSYRIQ 500
gnomAD_SAV:     M    C I #S     P  AL H H  P    EKEP*H    E  #  TN  D   S    GS  AFMW     F   T S  Y   FD SR   #CV 
Conservation:  4833222247464843199993220655463659291358220326271719399939292100922340974021114535192919242674648251
SS_PSIPRED:    EEEE     EEEEE             EEEEEEE       EEEEEEEEEE            EEEEEEE       EEEEEEEE        EEEEEE 
SS_SPIDER3:    EEEE    EEEEEE     H H     EEEEEEE       EEEEEEEEEEE           EEEEEEE       EEEEEEEE      EEEEEEEE 
SS_PSSPRED:     EE      EEEE             EEEEEEEE         EEEEEEEEEE           EEEEEE        EEEEEEE        EEEEEEE
DO_DISOPRED3:                                                        DDDD D                                        
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                   D                                   
CARBOHYD:                    N                                                                                     

                       10        20        30        40        50        60        70        80        90     
AA:            DSPVAHLVAIDSNTGEVTAQRSLNYEEMAGFEFQVIAEDSGQPMLASSVSVWVSLLDANDNAPEVVQPVLSDGKASLSVLVNASTGHLLVPIETPNGLGP 600
BenignSAV:                                                                                   M                     
gnomAD_SAV:             TE    K I    M  KA VS Q  M T V R HT  T   L    F       D     F #  T  FMP        PL TK SKVF  
Conservation:  2301311537521693625333575921214261928291938272534352606491998294611903125180625664224823232242000012
SS_PSIPRED:         EEEEEE     EEEEE    HHH EEEEEEEEEE       EEEEEEEEEE       EEE                    EEEEE         
SS_SPIDER3:        EEEEEEE    EEEEEE      EEEEEEEEEEEE      EEEEEEEEEEE       EEEE      E   E       EEEEE          
SS_PSSPRED:         EEEEEE     EEE     HHHHH EEEEEEEEE        EEEEEEEEEE                             EEE           
DO_DISOPRED3:                                             D                                                  DDDDDD
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                      D D                                           DD                        DDDDDDDDD
CARBOHYD:                                                                                       N                  

                       10        20        30        40        50        60        70        80        90     
AA:            AGTDTPPLATHSSRPFLLTTIVARDADSGANGEPLYSIRSGNEAHLFILNPHTGQLFVNVTNASSLIGSEWELEIVVEDQGSPPLQTRALLRVMFVTSVD 700
BenignSAV:                                            N                                           R                
gnomAD_SAV:    #  N  LP A  P# LR # T    E L     HF*GTSN   #    I L MA*  IS  #   FTER* D A  A  *EI R * Q      L  G  
Conservation:  1121100120010035653462829196618625170612431125715320293435635846383632244151829192217152315242924415
SS_PSIPRED:                    EEEEEEEEE    HH   EEEEEE      EEE      EEEEEEE HHH    EEEEEEEEE      EEEEEEEEEEE   H
SS_SPIDER3:                    EEEEEEEEE     EE EEEEEEE      EEEE     EEEEEEE HHHH   EEEEEEEEE  E   EEEEEEEEEEE  HH
SS_PSSPRED:                    EEEEEEEEE          EEE         EE      EEEEEEEE       EEEEEEEEE        EEEEEEEEE   H
DO_DISOPRED3:  D                                                                                                   
DO_SPOTD:                                                                                                          
DO_IUPRED2A:   DDDDDDD DD                      DDD                                                                 
CARBOHYD:                                                                N  N                                      

                       10        20        30        40        50        60        70        80        90     
AA:            HLRDSARKPGALSMSMLTVICLAVLLGIFGLILALFMSICRTEKKDNRAYNCREAESTYRQQPKRPQKHIQKADIHLVPVLRGQAGEPCEVGQSHKDVDK 800
gnomAD_SAV:          H   T  TL#PM   P I   TLR #    T ##Q  #  DKSF  WKPK I H        Y     TY M   S    K RK R YY N  N
Conservation:  3553331313045134523565343442454235633546533555335999748845632656695647495894667335251221131122122111
STMI:                            MMMMMMMMMMMMMMMMMMMMM                                                             
SS_PSIPRED:    HHHH         HHHHHHHHHHHHHHHHHHHHHHHHHHH            HHHHH                                           
SS_SPIDER3:    HHHHH        HHHHHHHHHHHHH HHHHHHHHHHHH          E  E                       E       E              H
SS_PSSPRED:    HH           HHHHHHHHHHHHHHHHHHHHHHHHHHH       HHH                                                  
DO_DISOPRED3:          D                                               DDDDDDDDDDDDDD          D    DDDDDDDDDDDDDDD
DO_SPOTD:        DDDDDDDDDDDDDD                         DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:                                                     DDDDDDDDDDDDDDDDDDDD                 DDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            EAMMEAGWDPCLQAPFHLTPTLYRTLRNQGNQGAPAESREVLQDTVNLLFNHPRQRNASRENLNLPEPQPATGQPRSRPLKVAGSPTGRLAGDQGSEEAP 900
BenignSAV:                                                                Q                  A                   V 
gnomAD_SAV:     #    S  L#Q DLS  IL P    HS DI R L   # A E#MA     Q WHK VFQ  #   KH T  C  CCKSV     L  K       K V 
Conservation:  0111132221023133232534323235421121111112160242232441451632343311223222211131133452143410100111102101
SS_PSIPRED:    HHH                  HHHHHHH       HHHHHHHHHH                                                       
SS_SPIDER3:    HHHHH                H  H          HHHHHHHHH                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDD                DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
MODRES_P:                                                                S                                         

                       10        20        30        40        50        60        70        80        90     
AA:            QRPPASSATLRRQRHLNGKVSPEKESGPRQILRSLVRLSVAAFAERNPVEELTVDSPPVQQISQLLSLLHQGQFQPKPNHRGNKYLAKPGGSRSAIPDTD 1000
BenignSAV:                                                                                    Y                    
gnomAD_SAV:    E   DC     W *N  S    K Q RTC   W  I# A  T TKQ SM # A       K   M    Y   C T Q YQ HT F  SA          
Conservation:  1021212257453433111114122124446765887776686563332254323763688799999897798679677689998424333362323738
SS_PSIPRED:           HHHH                 HHHHHHHHHH HHHHH                HHHHHHHHHH                              
SS_SPIDER3:            HHHHHHH             HHHH  EEEE HHHHH                 HHHHHHHHH                              
SS_PSSPRED:            HHHHHHH            HHHHHHHHHHH HHHHHH                 HHHHHHHH                              
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD       DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD     D    D  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            GPSARAGGQTDPEQEEGPLDPEEDLSVKQLLEEELSSLLDPSTGLALDRLSAPDPAWMARLSLPLTTNYRDNVISPDAAATEEPRTFQTFGKAEAPELSP 1100
BenignSAV:                           A                                                  T       Q                  
gnomAD_SAV:     A#  VR  R   EK RT #  A        K     Q  L      AQ  T  AD     T     S CND T LVP# MD L S  MLS  D T VN 
Conservation:  4243525443437254132525254432244465723672313433323641376474669877532696585337322122333594999832534222
SS_PSIPRED:                            HHHHHHHHHHHHHH    HHHHHHH                       EE            EE            
SS_SPIDER3:                 H            HHHHHHHHHH        HHHHH     H                 EE           EEEE        E  
SS_PSSPRED:                             HHHHHHHHHHHH     HHHHHHHH                                                  
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                  DD     DDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD   D                                                          DDDD  D
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDD DDDDD   DD DDDDDDD DDD      D  DDD       DDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
MODRES_P:                                                                   S                                      

                       10        20        30        40        50        60        70        80    
AA:            TGTRLASTFVSEMSSLLEMLLEQRSSMPVEAASEALRRLSVCGRTLSLDLATSAASGMKVQGDPGGKTGTEGKSRGSSSSSRCL 1184
gnomAD_SAV:    A M#      L  NL  DL MQ#CT T M DTF V LQ LFY# I   Y  I      R *A  VREM# DAR#SSTGG  #  
Conservation:  123384647567665664566364222422334448477444444443401221120121121111211111111111111111
SS_PSIPRED:         HHHHHHHHHHHHHHHHHH         HHHHHHH     EE       HH                             
SS_SPIDER3:       E  HHHHHHHHHHHHHHHH         HHHHHHHH          H  HHH                             
SS_PSSPRED:          HHHHHHHHHHHHHHHHHH       HHHHHHHH                                             
DO_DISOPRED3:  DDDDDDDDDDD      DDD DDDDDDDDDDDDDDDD      DDD  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDD                     DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDD  D          DDD DD DD  D                     DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD