Q9NQG7  HPS4_HUMAN

Gene name: HPS4   Description: Hermansky-Pudlak syndrome 4 protein

Length: 708    GTS: 1.522e-06   GTS percentile: 0.457     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


PathogenicSAV: 1      BenignSAV: 12      gnomAD_SAV: 448      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MATSTSTEAKSASWWNYFFLYDGSKVKEEGDPTRAGICYFYPSQTLLDQQELLCGQIAGVVRCVSDISDSPPTLVRLRKLKFAIKVDGDYLWVLGCAVEL 100
gnomAD_SAV:        A R# E  LS # C    #      DNLA # V   C   NP G      RRT    H I    G  S   CM  R   V I RVN  L #   D 
Conservation:  3211011101120352487755256755747476257457562352342655366646753373244522342343854368751323244757562254
SS_PSIPRED:                   EEEEEEE             EEEEEE     HHHHHHHHHHHHHHHHHHHHH     EEEEE   EEEEEEE  EEEEEE     
SS_SPIDER3:                  EEEEEEE   E        H EEEEEE     HHHHHHHHHHHHHHHHHHHH      EEEEEE  EEEEEE   EEEEEE E   
SS_PSSPRED:                  EEEEEEEE  E          EEEEE       HHHHHHHHHHHHHHHHHH        EEEE   EEEEEE   EEEEE      
DO_DISOPRED3:  DDDDDDDDDDDD                                                                                        
DO_SPOTD:      DDDDDDDDDD                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            PDVSCKRFLDQLVGFFNFYNGPVSLAYENCSQEELSTEWDTFIEQILKNTSDLHKIFNSLWNLDQTKVEPLLLLKAARILQTCQRSPHILAGCILYKGLI 200
PathogenicSAV:                                                      R                                              
BenignSAV:           L                                                                                             
gnomAD_SAV:    S  GSQQ  N    V S #H   AVV #I       M     VK T NDIR VRE LSF G    A MDS   P   C# H   CL RV #  T   EP 
Conservation:  4323412582364346195386421462113351821272133133512335433573562448353857888899877895986342646877462645
SS_PSIPRED:     HHHHHHHHHHHHHHHHHH   HHHHHHH  HHHHHHHHHHHHHHHHHHHHHHHHHHH           HHHHHHHHHHHHHHHH     EEEEEE  EE
SS_SPIDER3:     HHHHHHHHHHHHHHHHH    HHHHHH    HHHHHHHHHHHHHHHH  HHHHHHH  H         HHHHHHHHHHHHHHH     EEEEEEE  EE
SS_PSSPRED:     HHHHHHHHHHHHHHHHHH   HHHHHHH  HHHHHHHHHHHHHHHHHH HHHHHHHH H          HHHHHHHHHHHHHHH      EEEEE  EE
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            VSTQLPPSLTAKVLLHRTAPQEQRLPTGEDAPQEHGAALPPNVQIIPVFVTKEEAISLHEFPVEQMTRSLASPAGLQDGSAQHHPKGGSTSALKENATGH 300
BenignSAV:                                 G                                                         A             
gnomAD_SAV:    AI   L  V  TI P *I S#K  F M G  L  R VT  LKIR    SMS#   V#  K L#  VAGY   A    ED D  R EAEGP      T  R
Conservation:  7667629245435534201101310223100113032145115133397741184007312423213413132232110111113100011100110010
SS_PSIPRED:    EEE   HHH HHEEE                            EEEEEE  HHHHHHH     HHH                                  
SS_SPIDER3:    EEEE  H HHH E EEE                         EEEEEEE  HHHHHH      H                                    
SS_PSSPRED:    EEE         EEE                            EEEEEE  HHHHHHH                                          
DO_DISOPRED3:                     DDDDDDDDDDDDDDDDDD                       DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:                           DDDDDDDDDDDDDDDD                        DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:              DDD DD DDDDDDDDDDDDDDDDDDDDD                       D   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            VESMAWTTPDPTSPDEACPDGRKENGCLSGHDLESIRPAGLHNSARGEVLGLSSSLGKELVFLQEELDLSEIHIPEAQEVEMASGHFAFLHVPVPDGRAP 400
BenignSAV:                                                          #                    R                         
gnomAD_SAV:       TS  AAHRIYREKS SH W K RFF S YVQ  M S PPS VGD    IGPFP     L# A    PKTR L T* M# #P  I#I R SI#    #
Conservation:  1112112211101210101110011111100111000121010121111310111112221220131212233312111011111201221001011100
SS_PSIPRED:                                    HH                       HHHH       HHH     HH                      
SS_SPIDER3:                                                             H   H      H H      H                      
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DDDD                 DD DDDDDDDDDDD D DDDDDDD        D
MODRES_P:                                                            S                                             

                       10        20        30        40        50        60        70        80        90     
AA:            YCKASLSASSSLEPTPPEDTAISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQAPIPRADPLPRRTRRPLLLPRLDPGQRGNKLPTGEQGLDEDVDGVCES 500
BenignSAV:                                               V                                                         
gnomAD_SAV:    F  #  GTF GVKTKL K AP GRWS A#DLA   R EV  LVK#      H R      VHG NCGT   SC       # PSM DHRPG #IV FY  
Conservation:  0001200000102201312021010112222113011111110011110120100020111100021101011111100100011120100000110010
SS_PSIPRED:                                  HHHH     HH                                                           
SS_SPIDER3:                                  HHHHHH   HHH                                                          
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            HAAPGLECSSGSANCQGAGPSADGISSRLTPAESCMGLVRMNLYTHCVKGLVLSLLAEEPLLGDSAAIEEVYHSSLASLNGLEVHLKETLPRDEAASTSS 600
BenignSAV:                                                        M              V                                 
gnomAD_SAV:    QT RDVVFN  LV R*  VL  G   C P S K SV HL VSF  DSI   L      KL    ITVT  LFQ  PP #KE Q   E MP SN  V MNG
Conservation:  0011011000002100101110011210120110000421319827253664539453214004013235644667767787867924323110122222
SS_PSIPRED:                                            EEEEEEE  HHHHHHHH  HH   HHHHHHHHHHHHHHH HHHHHHHH            
SS_SPIDER3:                                          EEEEEEEE E  HHHHHHHH  H    HHHHHHHHH HHH       HHH            
SS_PSSPRED:                                           EEEEEEE    HHHHHHH       HHHHHHHHHHHHHHH      HHH            
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                                                
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                                                 
DO_IUPRED2A:   DDD     DDDDDDDDDDDDDDDDDDDD                                                             DD D       

                       10        20        30        40        50        60        70        80        90     
AA:            TYNFTHYDRIQSLLMANLPQVATPQDRRFLQAVSLMHSEFAQLPALYEMTVRNASTAVYACCNPIQETYFQQLAPAARSSGFPNPQDGAFSLSGKAKQKL 700
BenignSAV:          Y                  H  H                                                                        
gnomAD_SAV:    N # IY  H  R RIG  L M #LH CCLR DI  VY  LV  RV F I  G   S    G HS  G  LR# VR  QN S  HLEE TV   S  E   
Conservation:  3628474725533534544222321422755753858448111433474556643265445352555547641222124684733563582854585349
SS_PSIPRED:       EEEEE    EE         HHHHHHHHHHHHHHHHHHH   EEEEEEE   EEEEEE    EEEEEEE            HHH      HHHHHHH
SS_SPIDER3:       EEEEE  HHHHE        HHHHHHHHHHHHHHHHHH     EEEEEE   EEEEEE    EEEEEEE                   H HHHHHHH
SS_PSSPRED:        EE HHHHHHH            HHHHHHHHHHHHHHHH  HHHEEEEE   EEEEE      EEEEE                      HHHHHHH
DO_DISOPRED3:                                                                              DDDDDDDDDDDDDDDDDDDDD   
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                   D   D  DD           

                       
AA:            LKHGVNLL 708
gnomAD_SAV:       R K  
Conservation:  66674585
SS_PSIPRED:    HH      
SS_SPIDER3:    HH      
SS_PSSPRED:    HHH     
DO_DISOPRED3:          
DO_SPOTD:         DDDDD
DO_IUPRED2A: