Q9NUW8  TYDP1_HUMAN

Gene name: TDP1   Description: Tyrosyl-DNA phosphodiesterase 1

Length: 608    GTS: 2.559e-06   GTS percentile: 0.820     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


PathogenicSAV: 2      BenignSAV: 8      gnomAD_SAV: 308      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MSQEGDYGRWTISSSDESEEEKPKPDKPSTSSLLCARQGAANEPRYTCSEAQKAAHKRKISPVKFSNTDSVLPPKRQKSGSQEDLGWCLSSSDDELQPEM 100
PathogenicSAV: R                                                                                                   
BenignSAV:                                                                                                   D     
gnomAD_SAV:    R #  GH G  #C   DR  *NLQL  T I  V  TS   V D  CA  KT   TYR RM*  EY    T     K  TS *G  S Y #NR  D    V
Conservation:  6344316878568686752352100323222001020010000200246555333113300523212111114115331112323693686855711210
SS_PSIPRED:                                   HHHHH           HHHHHHHHHHH                                          
SS_SPIDER3:      E       E                                      HHHHHHH                                            
SS_PSSPRED:             EE                                    HHHHHHHHHHH                                          
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
MODRES_P:                                                                  S                                       

                       10        20        30        40        50        60        70        80        90     
AA:            PQKQAEKVVIKKEKDISAPNDGTAQRTENHGAPACHRLKEEEDEYETSGEGQDIWDMLDKGNPFQFYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSA 200
BenignSAV:     L                                T                                                    G             
gnomAD_SAV:    L  *#  A    G  VFV S#S D  AG D T T    #  G #* A  V#R    I Y   H    F  A   TA*   ES P  GL Y   #M  C  
Conservation:  0000000000121100112100110102100321111000101112113324729434012326375656829511259346778575776567664575
SS_PSIPRED:     HHHHHHH                         HHH                 HHHHH      EEEEEEE             HHHHH      HHHHH
SS_SPIDER3:    HHHHHHHHH                              HH            HHHH       EEEEEEE           E HHHHH H     EEEE
SS_PSSPRED:     HHHHHHH                               HHH                       EEEEEE             HHHHH     HHHHHH
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                              
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                               
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DD DDDDD                                               
MODRES_P:                                                    TS                                                    

                       10        20        30        40        50        60        70        80        90     
AA:            QFNYCFDVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSP 300
gnomAD_SAV:       H  NMY*FL PH   LGT AV V     #DTEPY RS    NK  CV  T MN V  A Q Q  V #C  V W  #RA #  R  *Y N   M  NL
Conservation:  9999767619763979267723954678975955861923382471672799656646595677779692739759677597966247949977748488
SS_PSIPRED:    HHHHHH HHHHHHH  HHH    EEEEE   HHHHHHHHHH      EEEEE            EEEEEEE   EEEEEE     HHHHHHH   EEE  
SS_SPIDER3:    EE E   HHHHHHH   HH    EEEEE     HHHHHHHH      EEEEEE        E EEEEEEEE  EEEEEEE     HHHHHH    EEE  
SS_PSSPRED:    HHHH   HHHHHHH         EEEEE    HHHHHHHHHH     EEEEEE        HHHHHHHHHH    EEEEE     HHHHHHHHH EEE  
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       
BINDING:                                                                       K                                   
ACT_SITE:                                                                    H                                     

                       10        20        30        40        50        60        70        80        90     
AA:            LYPRIADGTHKSGESPTHFKADLISYLMAYNAPSLKEWIDVIHKHDLSETNVYLIGSTPGRFQGSQKDNWGHFRLKKLLKDHASSMPNAESWPVVGQFSS 400
BenignSAV:        Q                                                                                    T           
gnomAD_SAV:     HL*T  AS#R   P   LT VI   ST   VL     MGL    # C R          C         V     E   E  *F   T   HLI  L* 
Conservation:  7654311310229790829839841990694342815843164397685536566695786544124539966665568233302131141964589998
SS_PSIPRED:                      HHHHHHHHHHH     HHHHHHHHHH       EEEEEE          HHHHHHHHHHHHHH            EEEEEE 
SS_SPIDER3:      EE              HHHHHHHHHHH     HHHHHHHHHH       EEEEEE            HHHHHHHHHHHHH           EEEEEE 
SS_PSSPRED:                      HHHHHHHHHHHH   HHHHHHHHHHH       EEEEEE            HHHHHHHHHHHHH           EEEEEE 
DO_DISOPRED3:          D  DDD                                                                                      
DO_SPOTD:             DDDDDDD                                                                                      
DO_IUPRED2A:              DD                                                                                       
REGION:                                                                                                           S

                       10        20        30        40        50        60        70        80        90     
AA:            VGSLGADESKWLCSEFKESMLTLGKESKTPGKSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMPHIKTYMRP 500
PathogenicSAV:                                                                                             R       
gnomAD_SAV:    # YM GG   G    LED     R K RP RQ CF F#F  S  *T Q  S E A AD   C   ## R  * P # Y L  G  SC  G      D   
Conservation:  6876918348762589225622361002121111343376683546792999966597998745367579198436732819225697486898888482
SS_PSIPRED:         HHHHHHHHHHHHHHHHH               EEEE  HHHHH               HHHHHH HHHHHHHHHH              EEEEE 
SS_SPIDER3:         H HHHHHHHHHHHHHHH              EEEE   HHHHH        E EE   HHHHHH HHHHHHHHH               EEEEE 
SS_PSSPRED:          HHHHHHHHHHHHHH                EEEE   HHHHHH              HHHHHHHHHHHHHHHHH               EEE  
DO_DISOPRED3:                        DDDDDDDDDDD                                                                   
DO_SPOTD:                              DDDDDDD                                                                     
DO_IUPRED2A:                                                                                              DD       
BINDING:                                                                                                     K     
REGION:        VGS                                                                                                 
ACT_SITE:                                                                                                  H       

                       10        20        30        40        50        60        70        80        90     
AA:            SPDFSKIAWFLVTSANLSKAAWGALEKNGTQLMIRSYELGVLFLPSAFGLDSFKVKQKFFAGSQEPMATFPVPYDLPPELYGSKDRPWIWNIPYVKAPDT 600
BenignSAV:                                                                      L  A                               
gnomAD_SAV:      GS    C#  ARTD  R S  T QE  I   FCF*K R    S        R      T    LI A    C    KQC G GQ  M D     VL M
Conservation:  8365225586569533333545533553545345657666576474341212414201221110131012325346730162121232232221112212
SS_PSIPRED:          EEEEEEE     HHHH EE     EEEEEEEEEEEEE                         EEE                             
SS_SPIDER3:          EEEEEEE      HE   EE    EEEEEEEEEEEEE  H                    E E E   E             EEEE        
SS_PSSPRED:          EEEEEEE     HHH         EEEEEEEEEEEEE                                            EEEE         
DO_DISOPRED3:                                                     DDDDDDDDDDDDD                                    
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       
SITE:                           S                                                                                  

                       
AA:            HGNMWVPS 608
gnomAD_SAV:    R    M  
Conservation:  22323141
SS_PSIPRED:            
SS_SPIDER3:        E   
SS_PSSPRED:            
DO_DISOPRED3:          
DO_SPOTD:              
DO_IUPRED2A: