Q9NZR4  VSX1_HUMAN

Gene name: VSX1   Description: Visual system homeobox 1

Length: 365    GTS: 1.703e-06   GTS percentile: 0.538     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


PathogenicSAV: 4      BenignSAV: 12      gnomAD_SAV: 188      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAVAPCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPC 100
BenignSAV:     K                                                                                                   
gnomAD_SAV:    K C NLI   H#    VM  RC   LCL D   AHM        V T    R  *DSL     L   I RY   L D Q  F    V  K  LE  G   
Conservation:  9000000011100100000111000111122211232311000110100010100000000012220100001213100022222220130000000000
SS_PSIPRED:                                    HHHH                                                         HHH    
SS_SPIDER3:                                   HHHHH                                                          H    H
SS_PSSPRED:                                    HHHH                                                                
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDD   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD             D           
MOTIF:                                       FAITDLLG                                                              

                       10        20        30        40        50        60        70        80        90     
AA:            LLLADVPFLPPRGPEPAAPLAPSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVK 200
PathogenicSAV:                                                                  W        H                         
BenignSAV:        PE                         S      I     E      S       MV     Q                                  
gnomAD_SAV:       EEM#  #  C        S  SQS HSS   N     F  E H   WS   SC PFV K  WW T   A QH  K K     SYCSE   *    L 
Conservation:  0211221000012120012110110100010001000000022211213210121111110212220244432153233333213433522323423432
SS_PSIPRED:                                                        HH        HHHHH     HHHHHHHHHHHHHHH   HHHHHHHHH 
SS_SPIDER3:                                                                            HHHHHHHHHHHHHH    HHHHHH    
SS_PSSPRED:    HHH                                                                     HHHHHHHHHHHHHH     HHHHHHHH 
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                    
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:        DD D DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DDD                            
DNA_BIND:                                                                     KRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVK
MOTIF:                                                                     KRKKRR                                  

                       10        20        30        40        50        60        70        80        90     
AA:            TELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGAMVRHCIPLPDSVLNSAEGGLLGSCAPWLLGMHKKSMGMIRKPGSEDKLAGLWGSDHFKEG 300
PathogenicSAV:                                                        S                                            
BenignSAV:                                                   R                                                     
gnomAD_SAV:    I FSK # L    #L      W  LRAA #   KD P*W # HR  L  N   S S  R   F V R  R Y   V IV  LRG   M  V CC   #  
Conservation:  4245222455777969996776666956664565656677676635977344534222531334377890444532311111000210100110000100
SS_PSIPRED:        HHHHHHHHH HHHHHHHHHHHH      HH                              HHHH    HH                          
SS_SPIDER3:        HHHHHHHH   HHHHHHHHHH       H                                 HH                                
SS_PSSPRED:          H HHHH  HHHHHHHHHHH                                                                           
DO_DISOPRED3:                      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD       D D   DDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:                         DD                                                   D DDDD   DD   DDDDDDDDDDD
DNA_BIND:      TELPEDRIQVWFQNRRAKWRKRE                                                                             

                       10        20        30        40        50        60     
AA:            SSQSESGSQRGSDKVSPENGLEDVAIDLSSSARQETKKVHPGAGAQGGSNSTALEGPQPGKVGAT 365
gnomAD_SAV:    AT N* R         HD   Q MS   C P##RK   AN E #S * F  M  DE     L T 
Conservation:  11011101000000111101245253555553332200000111102010101000000210000
SS_PSIPRED:                        HHHHHHHHHHHHHHHHHH                           
SS_SPIDER3:                          HHHHHHHHHHHHHHHH                           
SS_PSSPRED:                         HHHHHHHHHHHHHHHHH                           
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDD             DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD