Q9P218  COKA1_HUMAN

Gene name: COL20A1   Description: Collagen alpha-1(XX) chain

Length: 1284    GTS: 2.622e-06   GTS percentile: 0.834     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


      BenignSAV: 1      gnomAD_SAV: 794      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MSSGDPAHLGLCLWLWLGATLGREQVQASGLLRLAVLPEDRLQMKWRESEGSGLGYLVQVKPMAGDSEQEVILTTKTPKATVGGLSPSKGYTLQIFELTG 100
gnomAD_SAV:    T  R  VDIS G RQ  V  VEG E   RSF   PMV   W    *  LK  SHR*MLRM SI    D VM P PR   #S R  R       *VL*HI 
Conservation:  1111111110101110111102011312132544247455456337333241226554464624443646548574245647578351545245641523
STMI:          SSSSSSSSSSSSSSSSSSSSSS                                                                              
SS_PSIPRED:         HHHHHHHHHHHHHHH          EEEEEE    EEEEEEE       EEEEEEEE      EEEEE     EEEE       EEEEEEEEEE 
SS_SPIDER3:          HHHHHHHHHHHHH EEEEE       EEEEE   EEEEEEEE    EEEEEEEEEE      EEEE      EEEEE      EEEEEEEEEE 
SS_PSSPRED:           HHHHHHHHHHHH            EEEEE    EEEEEEE        EEEEEEE       EEEE     EEEE       EEEEEEEEE  
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDD                                                                            
DO_SPOTD:      DDDD                                                                                                
DO_IUPRED2A:                                                           DDDD       DDDDDDDDDDDDD DDDD               

                       10        20        30        40        50        60        70        80        90     
AA:            SGRFLLARREFVIEDLKSSSLDRSSQRPLGSGAPEPTPSHTGSPDPEQASEPQVAFTPSQDPRTPAGPQFRCLPPVPADMVFLVDGSWSIGHSHFQQVKD 200
BenignSAV:                                      L                                                                  
gnomAD_SAV:      P   V#TA #M     ITQYG R  T #C VLGH R NM  R  K TAK  AT IA   TH   SS# C  # MLV V  VAGRF# V     **   
Conservation:  3221636342633227320111231141021112121110031121100102021113111111011114271211228443766578758424843454
SS_PSIPRED:       EE  EEEEEEEE                                     EE                         EEEEE        HHHHHHHH
SS_SPIDER3:     E E   EEEEEEE                                       E                       EEEEEE    E   HHHHHHHHH
SS_PSSPRED:          EEEEEE                                                                  EEEEEE         HHHHHHH
DO_DISOPRED3:            DDDDDD        DDD  D DD   DDDDDDDDD                                                       
DO_SPOTD:                       DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                                  
DO_IUPRED2A:                        DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                             

                       10        20        30        40        50        60        70        80        90     
AA:            FLASVIAPFEIGPDKVQVGLTQYSGDAQTEWDLNSLSTKEQVLAAVRRLRYKGGNTFTGLALTHVLGQNLQPAAGLRPEAAKVVILVTDGKSQDDVHTAA 300
gnomAD_SAV:     QT  NTS   RL E   V  # GR GL  *G SFF  Q EM VD CCPHC#VEIMV     #QM     EQVTSVHS   RM M  MNS  * EM STT
Conservation:  8823532571642125555767576463788384341333254253235485996545847726543157310462521221354878786888551146
SS_PSIPRED:    HHHHH          EEEEEEE       EEE      HHHHHHHHHH           HHHHEEEE              EEEEEE      HHHHHHH
SS_SPIDER3:    HHHH    EEE   EEEEEEEEE    EEEEE      HHHHHHHHH            HHHHHHHHHH            EEEEEE     HHHHHHHH
SS_PSSPRED:    HHHHH          EEEEEEE      EEEE      HHHHHHHHHHH           HHHHHHHHH            EEEEEE       HHHHHH
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                      D D        DD                                                                    

                       10        20        30        40        50        60        70        80        90     
AA:            RVLKDLGVNVFAVGVKNADEAELRLLASPPRDITVHSVLDFLQLGALAGLLSRLICQRLQGGSPRQGPAAAPALDTLPAPTSLVLSQVTSSSIRLSWTPA 400
gnomAD_SAV:    H  R V M ILT      # T   F VYQ KY  I RMQ     S  V    HF W*   S  LW               I   P E  F#  C  C L#
Conservation:  1174124424455954555547844477172734542827844713752373436913542410000201031123223542702414434432428324
SS_PSIPRED:    HHHHH   EEEEEEE    HHHHHEEE     EEEEEE  HHHHHHH   EEEEEEEEE                      EEEEEE    EEEEEEE  
SS_SPIDER3:    HHHHH   EEEEEEEE   HHHHHHH      EEEE    HHHHH      EEEEEEEEE                    EEEEEEEE   EEEEEE   
SS_PSSPRED:    HHH     EEEEEE     HHHHHHHH      EEEE   HHHHHHHHHHHHHHHHHHHH                     EEEEEE    EEEEEE   
DO_DISOPRED3:                                                                 D   DDDDD                            
DO_SPOTD:                                                                    DDDDDDDDD                             
DO_IUPRED2A:                                                                    DDDDDDDDD                          

                       10        20        30        40        50        60        70        80        90     
AA:            PRHPLKYLIVWRASRGGTPREVVVEGPAASTELHNLASRTEYLVSVFPIYEGGVGEGLRGLVTTAPLPPPRALTLAAVTPRTVHLTWQPSAGATHYLVRC 500
gnomAD_SAV:    LQ  I  V I QVF D ILGK   GR TTT Q RS   #      # S C D   KV Q     TR  LAQV    # ML  I #  * LPRV Y   *Y
Conservation:  1116237655423515213166341721353170373415363537465311236247552126357228115242234323325291431465286433
SS_PSIPRED:         EEEEEEEE      EEEEE     EEEEE      EEEEEEEEEE        EEEEE       EEEEEEEE   EEEEEEE      EEEEEE
SS_SPIDER3:         EEEEEEEE      EEEEE     EEEEE      EEEEEEEEEE    E   E EEE        EEEEEEE   EEEEEEE      EEEEEE
SS_PSSPRED:         EEEEEEEE      EEEEEE    EEEEE      EEEEEEEEEE         EEEE         EEEEE    EEEEEEE      EEEEEE
DO_DISOPRED3:                                                           DDDDDDDDDD                                 
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                       DDDDDDDDD D                            DDDDDDD   D DDD D                     DDD

                       10        20        30        40        50        60        70        80        90     
AA:            SPASPKGEEEEREVQVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTLAPPRHLGFSDVSHDAARVFWEGAPRPVRLVRVTYVSSEGGHSG 600
gnomAD_SAV:     LTARTD    Q ML R# K   G   S  EHD L *G Q  ASTD WRVG   SA   A   A   # Q V * Y Q VL  LHVI # CL R  EYL 
Conservation:  2312113221206533213242514706253815254552535283423312371361341161641448334272922210122124536152164123
SS_PSIPRED:    EE       EEEEE     EEEE       EEEEEEEEE         EEEEE        EEEEEE     EEEEEE      EEEEEEEEE       
SS_SPIDER3:    EE      EEEEEE     EEEEE      EEEEEEEEEE       EEEEEE        EEEEEEE   EEEEEEE     E EEEEEEE       E
SS_PSSPRED:    E         EEEE     EEEE        EEEEEEE           EEEE          EEEE    EEEEEEE      EEEEEEEEE       
DO_DISOPRED3:           DD D                               DDDDDDDDDDDDDDD                                         
DO_SPOTD:                                                                                                          
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDD D DD    DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                      DDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            QTEAPGNATSATLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKAPSPSQLSMTELPGDAVQLAWVAAAPSGVLVYQITWTPLGEGKAHEISVPGNLG 700
gnomAD_SAV:           T L MVER#      ALS I*FSAE SP M  SG       N      M    NVA  E   TPL ALF C  M*M   K    Q  AS  VS
Conservation:  4333343233416149374618162513041251622353335713684932534334444143519232333575263558235434232542427111
SS_PSIPRED:    EEE      EEEE       EEEEEEEEE        EEEEEE        EEEEE     EEEEEEEE      EEEEEEEEE      EEEE      
SS_SPIDER3:    EEE      EEEE       EEEEEEEEE          EEEEE       E EEEE    EEEEEEEE      EEEEEEEEE      EEEE      
SS_PSSPRED:     EE      EEEE       EEEEEEEEE           EEE                  EEEEEEEE      EEEEEEEE       EEEEE     
DO_DISOPRED3:                                       DD D                                                           
DO_SPOTD:                                                                                                          
DO_IUPRED2A:   DDDDDDDDDDDDDDDDD                    DDDDDDDDDDDDDDDDDDD                                  D D  D    
CARBOHYD:            N                                                                                             

                       10        20        30        40        50        60        70        80        90     
AA:            TAVLPGLGRHTEYDVTILAYYRDGARSDPVSLRYTPSTVSRSPPSNLALASETPDSLQVSWTPPLGRVLHYWLTYAPASGLGPEKSVSVPGARSHVTLPD 800
gnomAD_SAV:    PTI      Y  *NI V V #G RDC      H N  K G T  F    VLDS #R K  #MHL RCL  #   CT#  R * D F P  EP N MIP #
Conservation:  2537235221166365459482865493454335241112336752516235443561638166133653935372332211241242435113242712
SS_PSIPRED:    EEE        EEEEEEEEEE        EEEEE          EEEEEEE    EEEEEEE     EEEEEEEEEE       EEEEE    EEEEE  
SS_SPIDER3:    EEE        EEEEEEEEEE    E   EEEEEE          EEEEEEE   EEEEEE      EEEEEEEEE        EEEE     EEEE   
SS_PSSPRED:    EEEE       EEEEEEEEEE         EEEE            EEEEE    EEEEEE      EEEEEEEEE        EEEE     EEEEE  
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:    D                             DDDDDDD    DDDDDDDD                                   DD DD DD       

                       10        20        30        40        50        60        70        80        90     
AA:            LQAATKYRVLVSAIYAAGRSEAVSATGQTACPALRPDGSLPGFDLMVAFSLVEKAYASIRGVAMEPSAFGGTPTFTLFKDAQLTRRVSDVYPAPLPPEHT 900
gnomAD_SAV:     * V    I LL  C#V     M  M    Y   HL SA    H  M  N M N    SQSL T#L    E          P  G    ICLVSRLL   
Conservation:  8243418262546251154503153243726512112122284646238773132554328443322232122353533334533133132212452455
SS_PSIPRED:         EEEEEEEEEE        EE EEE             EEEEEEEEEEE   EEEEEEEEE        EEEEE     EEEEEE         EE
SS_SPIDER3:         EEEEEEEEEEE      EE   EE               EEEEEEEEE  EE EEEEEE         EEEEE       EEEEE        EE
SS_PSSPRED:        EEEEEEEEEEE                               EEEEEEEE      EEEEEE       EEEEE                    EE
DO_DISOPRED3:                   DDDDDDDDDDDDDDDDDDDDDDDDDDD                                  D                     
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                             DDD DD                                                                    

                       10        20        30        40        50        60        70        80        90     
AA:            IVFLVRLLPETPREAFALWQMTAEDFQPLLGVLLDAGKKSLTYFHRDPRAALQEATFDPQEVRKIFFGSFHKVHVAVGRSKVRLYVDCRKVAERPLGEMG 1000
gnomAD_SAV:    MI  MCP SDISH   T    IT#N  LHHR  PV W     S  CASK    AG  NL     S LRNS  MLM   L EIS     WNM #Q  AVI 
Conservation:  5322474554553636446843425449237524531242828732322324745384436645696877986544552325285599335465233125
SS_PSIPRED:    EEEEEE        EEEEEEEE       EEEEE     EEEEEE      EEEEEE HHHHHHHH      EEEEE   EEEEEE    EEE       
SS_SPIDER3:    EEEEEE       EEEEEEEEE        EEEE     EEEEEEE     EEEEEE  HHHHHHH      EEEEE   EEEEEEE H  E EE     
SS_PSSPRED:    EEEEEE       HHHHHHHHH         EEE     EEEEE        EEEEE    H HH         EE    EEEEEE  HHHHHH      
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                  D  D 

                       10        20        30        40        50        60        70        80        90     
AA:            SPPAAGFVTLGRLAKARGPRSSSAAFQLQMLQIVCSDTWADEDRCCELPASRDGETCPAFVSACSCSSETPGPPGPQGPPGLPGRNGTPGEQGFPGPRGP 1100
gnomAD_SAV:        ES IA E      DLW  L V *RE   VMYN I  NG G FD ADPK EQ  L# M  Y     NS #     S         SEKHVCS   C 
Conservation:  1253177448966434667275752477526333732144218189456423523387321226374422374594294391782271483591384476
SS_PSIPRED:          EEEEHHH             EEEEEEEE                                                                  
SS_SPIDER3:          EEE  HH            EEHEEEEEEE                                                                 
SS_PSSPRED:          EEEE             HHHHHHHH EE                                                                  
DO_DISOPRED3:          D    DDD DDD  D               D DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD D
DO_SPOTD:                        DDDDDD                DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:    D       DDD                                 D                    DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            PGVKGEKGDHGLPGLQGHPGHQGIPGRVGLQGPKGMRGLEGTAGLPGPPGPRGFQGMAGARGTSGERGPPGTVGPTGLPGPKGERGEKGEPQSLATLYQL 1200
gnomAD_SAV:    #AIRRK  GP F    C#ASP D TRTG         #  EAS P *R D SWV       S  EDQ     M T   LR R K*R T KL      C*F
Conservation:  5913524840812806404612613821613953838836832726633745634822814810934921813646553816645433543442313244
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                     H  
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80    
AA:            VSQASHVSKFDSFHENTRPPMPILEQKLEPGTEPLGSPGTRSKALVPGEWGRGGRHLEGRGEPGAVGQMGSPGQQGASTQGLWE 1284
gnomAD_SAV:     #   YM Q N  QKDIGL ILT Q R #L SKS RY   HN S GL   VH S## Q  R S# F *T NL *  PGI*  * 
Conservation:  433413324322212024262721301122624223133013102035113102111312512121001202200201102220
SS_PSIPRED:                                                                                        
SS_SPIDER3:                                                                                        
SS_PSSPRED:                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DD  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD