Q9UMD9  COHA1_HUMAN

Gene name: COL17A1   Description: Collagen alpha-1(XVII) chain

Length: 1497    GTS: 1.599e-06   GTS percentile: 0.491     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


PathogenicSAV: 7      BenignSAV: 24      gnomAD_SAV: 932      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MDVTKKNKRDGTEVTERIVTETVTTRLTSLPPKGGTSNGYAKTASLGGGSRLEKQSLTHGSSGYINSTGSTRGHASTSSYRRAHSPASTLPNSPGSTFER 100
BenignSAV:        A                                                                                                
gnomAD_SAV:       A *  #  ID I #  S #A PI I# S TSR R VCV   T C ARQ   K#  Q CRS L  P#R Q L F#C     R LV       V A#  
Conservation:  9322101112412214422332233243567858243221212221252232342132243432213233233132331143322324213154173155
SS_PSIPRED:                   EEEEEEEE EEEE                        EEEEE      EEE                                EE
SS_SPIDER3:           E    EEE EEE EE EEE                 E        EEEEE     EEEEE              E                  
SS_PSSPRED:                    EEEEEE                                         EE                                   
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            KTHVTRHAYEGSSSGNSSPEYPRKEFASSSTRGRSQTRESEIRVRLQSASPSTRWTELDDVKRLLKGSRSASVSPTRNSSNTLPIPKKGTVETKIVTASS 200
BenignSAV:                                                                                             A           
gnomAD_SAV:     I I C VS  T N    L  SQ K GT L TEQ E P N  * *V NV  P **#K E   CWFEE Q# GLI  Q   S  RNRN A     T  V  
Conservation:  6112222375725424777621775334224588644586598576765574346577568678645546263665542434564866323535124233
SS_PSIPRED:    EEEE                  HHH             HHHHHHHHH         HHHHHHHHH                        EEEEEEEE   
SS_SPIDER3:    EEEE                                  HHHHHHHHH          HHHHHHHH                        EEE EEEE   
SS_PSSPRED:    EEE                                   HHHHHHHHH          HHHHHHHH                         EEEEEEE   
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                          DDDDDDDDDDDDDDDD                 
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            QSVSGTYDATILDANLPSHVWSSTLPAGSSMGTYHNNMTTQSSSLLNTNAYSAGSVFGVPNNMASCSPTLHPGLSTSSSVFGMQNNLAPSLTTLSHGTTT 300
PathogenicSAV:                                                                 C                                   
BenignSAV:              M                    I      T                                                              
gnomAD_SAV:    RLA    N MV E#KI     P   ST    V C K## I   #F   K   VVAALR    IV GL   LS PI Y  A         RM    Y  I 
Conservation:  1433327433254412534253655854442245234023112231232323223415266933232222123224334439357753322221223223
SS_PSIPRED:           EEEEE       EEE                                                         EE                   
SS_SPIDER3:         EEE EEE        EE                    HHH          E                       EEEEE                
SS_PSSPRED:             EEE                                                                                        
DO_DISOPRED3:  DDDDDD                             DDDDDDDDD   DDDDDDDDD DDDDDDDDDDDDDDDDDDDDDDD DDDDDDDDDDD  DDDDDD
DO_SPOTD:                                                                                                          
DO_IUPRED2A:         DDD             D   DDDDDDDDDDDDDD D  DD                     DDD      D              DDD      

                       10        20        30        40        50        60        70        80        90     
AA:            TSTAYGVKKNMPQSPAAVNTGVSTSAACTTSVQSDDLLHKDCKFLILEKDNTPAKKEMELLIMTKDSGKVFTASPASIAATSFSEDTLKKEKQAAYNADS 400
BenignSAV:                                                                                    T                    
gnomAD_SAV:      IVCEMN I S   V MSA I  #T F A  HRN  S           E I    DV MV VIQ RA   AD # N TTAY    I  I  K  C S  
Conservation:  2123564478224223223432423122211311341315635532247442316452715533575783823321112422325545555422221111
SS_PSIPRED:         EEE                         HHHH    EEEEEEE       HHHEEEEEE      EE            HHHHHHHHHHHHHHHH
SS_SPIDER3:      EEEEEE             E           HHHH    EEEEEEE         EEEEEEE      EEE           HHHHHHHHHHH     
SS_PSSPRED:                                       HHH    EEEEEE      HHHHHHHHHE                    HHHHHHHHHHHHH   
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                         DDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:                     DDDDDDDDDDDDDDDDDDDDDD             DDDDDDDD        DDDD   DDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:    DDDDDDDDDDDDDDDDDDDDD                                 DDDDD                                        

                       10        20        30        40        50        60        70        80        90     
AA:            GLKAEANGDLKTVSTKGKTTTADIHSYGSSGGGGSGGGGGVGGAGGGPWGPAPAWCPCGSCCSWWKWLLGLLLTWLLLLGLLFGLIALAEEVRKLKARVD 500
BenignSAV:                                S       #         S            S                                         
gnomAD_SAV:    DP  K  R  EI   R  I    NR  S #     EE  S DVT SS S  T S #A S   G  E   C   PR        S  P G KM   NTC  
Conservation:  1102123622112235362434423111111111111133211142411522133444234948769694544339656656455646534552852672
STMI:                                                                             MMMMMMMMMMMMMMMMMMMMM            
SS_PSIPRED:      EEHH      EE       HHHH                                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SS_SPIDER3:      HE E   EEEEE       E E                                     HHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHH HH
SS_PSSPRED:       E                  E                                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HH
DO_DISOPRED3:  D D      D                   DDDDDDDDDD                                   DDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:               D          DDDDDDD    DDDDDDDDDDD                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            ELERIRRSILPYGDSMDRIEKDRLQGMAPAAGADLDKIGLHSDSQEELWMFVRKKLMMEQENGNLRGSPGPKGDMGSPGPKGDRGFPGTPGIPGPLGHPG 600
BenignSAV:                                            M                                                            
gnomAD_SAV:    K *KS      CE R   #  GH  #IG EV T  N SAM IVRK DPR LLW   TVD#KK*  Q NA L C #   D    Q       V  AS    
Conservation:  2661011000002110001111120002210110130101010331153125325512211341449149149517138149519239139146117216
SS_PSIPRED:    HHHHHH           HHHH                        HHHHHHHH                                               
SS_SPIDER3:    HHHH            HHHHHH                       HHHHH                                                  
SS_PSSPRED:    HHHHH                                         HHH HHHHH                                             
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:                      DDDDDDDD DD   DDDDDD                    DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
MODRES_P:                                                 S                                                        

                       10        20        30        40        50        60        70        80        90     
AA:            PQGPKGQKGSVGDPGMEGPMGQRGREGPMGPRGEAGPPGSGEKGERGAAGEPGPHGPPGVPGSVGPKGSSGSPGPQGPPGPVGLQGLRGEVGLPGVKGDK 700
PathogenicSAV:                           V     D  R                                                                
BenignSAV:                                                                       R                                 
gnomAD_SAV:       QE *  I#R RDI   T  G #KD VATHCKVRR    K  DG TVA AVLP  R#  CT# SR FIS A   V S LA     * ##   DI C  
Conservation:  2373582683184270472173464563262563273361616734701523812822722821745711612711823712724733741713614755
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            GPMGPPGPKGDQGEKGPRGLTGEPGMRGLPGAVGEPGAKGAMGPAGPDGHQGPRGEQGLTGMPGIRGPPGPSGDPGKPGLTGPQGPQGLPGTPGRPGIKG 800
BenignSAV:       V                                                                                   H             
gnomAD_SAV:    RTLR A H   E  T  LSFAVKT I R  STF   R   E#SL    R  D  #D C   I   H  AAS E     S   S  THE  SIR QS #RC
Conservation:  8118238168516437235226227128137318337257125138146137156417216248267436238416146125245346257247148158
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            EPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGPPGEGLPGPPGPPGSFLSNS 900
PathogenicSAV:                                                            S                                        
gnomAD_SAV:      R  D MM W A L#I LS SQ   EVVE RAH  TRD  S         A    V R LSS HRSR  FL  SR  Q #S DVF  LTDL EL  F T
Conservation:  4371472543313423424483783483283282462364255353542301012132253355370361312543632522715035426224221322
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDD D     DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            ETFLSGPPGPPGPPGPKGDQGPPGPRGHQGEQGLPGFSTSGSSSFGLNLQGPPGPPGPQGPKGDKGDPGVPGALGIPSGPSEGGSSSTMYVSGPPGPPGP 1000
PathogenicSAV:                                       I                                                             
BenignSAV:      S                N  T                                                                              
gnomAD_SAV:    KSSV S A  RSH     N DT AL AQ  K  FLDLLAL F   R DF*E T AS L E ECH  NLS SR # #SN     V LR   M  LSA## T
Conservation:  5222263464362162272151151242354482451120211212201411182383282371153372452352342111113122311252494593
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            PGPPGSISSSGQEIQQYISEYMQSDSIRSYLSGVQGPPGPPGPPGPVTTITGETFDYSELASHVVSYLRTSGYGVSLFSSSISSEDILAVLQRDDVRQYL 1100
BenignSAV:                                 A                                                                       
gnomAD_SAV:     EHLAF T CD    *      *G G  A#V RI CT  SS T        D ISN      YIM   GAL  DI  LLF  P   T      VG H   
Conservation:  5935511122113312362454443123022253475694691471131113013513344124224433230312212332422232234343543211
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                          HH H       HH 
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDD       DDDDDDDDDDDDDDDDDDDDDDDDDDD                                              

                       10        20        30        40        50        60        70        80        90     
AA:            RQYLMGPRGPPGPPGASGDGSLLSLDYAELSSRILSYMSSSGISIGLPGPPGPPGLPGTSYEELLSLLRGSEFRGIVGPPGPPGPPGIPGNVWSSISVED 1200
gnomAD_SAV:    CR S   # #RE#  G     F     V  T H    ILN E  T    #QR   FLEN  KDP    *# G TSVI  SAAR L  ML    P   M  
Conservation:  1124264574474472411212222322334224322422242213148548478245232123231342334241361594391492392414513145
SS_PSIPRED:                               HHH                                                                      
SS_SPIDER3:                              H H                                                                       
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDD                     DDDDDDDDDDDDDDDDDD            DDDDDDDDDDDDDDDDDDD       

                       10        20        30        40        50        60        70        80        90     
AA:            LSSYLHTAGLSFIPGPPGPPGPPGPRGPPGVSGALATYAAENSDSFRSELISYLTSPDVRSFIVGPPGPPGPQGPPGDSRLLSTDASHSRGSSSSSHSSS 1300
gnomAD_SAV:    FL    S S    SD   LRR RR P HL AA T  N TTG  N  WGKPMG#  N NMGN TI #  R  SEESL  RC  CMNVFQNWS RF LD LF
Conservation:  5217632333231373496589396284341122134220012303335342522322231231736956963534812321312211302221111426
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:           DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD        DDD         DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            VRRGSSYSSSMSTGGGGAGSLGAGGAFGEAAGDRGPYGTDIGPGGGYGAAAEGGMYAGNGGLLGADFAGDLDYNELAVRVSESMQRQGLLQGMAYTVQGP 1400
PathogenicSAV:   Q                                                                                                 
BenignSAV:                                               L R                        G   D                          
gnomAD_SAV:    A QD  #R FV R RD TDFVVV S     TR TD  #  VSL R  A VTK SR TS AR V      G YHD    TG D   C  PP R VHAL DT
Conservation:  1422144312152454334433311111111113834311151434433334431143131231111120145224714735364237442311111384
SS_PSIPRED:                                                                                                        
SS_SPIDER3:                                                                                                        
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DDDDD         D           DDDDDDDDDDDD DDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            PGQPGPQGPPGISKVFSAYSNVTADLMDFFQTYGAIQGPPGQKGEMGTPGPKGDRGPAGPPGHPGPPGPRGHKGEKGDKGDQVYAGRRRRRSIAVKP 1497
BenignSAV:                                       V                                                              
gnomAD_SAV:    T  A      SMGEI    N M V PI  I I  VM  TT   E    S   S    SA S Y   H  QR T   A     I  RQ K SRT   L
Conservation:  3834824814513332332263336444435155442934724331512713833811813812503410212223432332001112211113211
SS_PSIPRED:                                                                                                     
SS_SPIDER3:                                                                                                     
SS_PSSPRED:                                                                                                     
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDD DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDD             DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
REGION:                                                                                          VYAGRRRRRSIAVKP
CARBOHYD:                          N