Q9UPZ3  HPS5_HUMAN

Gene name: HPS5   Description: Hermansky-Pudlak syndrome 5 protein

Length: 1129    GTS: 1.753e-06   GTS percentile: 0.560     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


PathogenicSAV: 4      BenignSAV: 12      gnomAD_SAV: 595      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MAFVPVIPESYSHVLAEFESLDPLLSALRLDSSRLKCTSIAVSRKWLALGSSGGGLHLIQKEGWKHRLFLSHREGAISQVACCLHDDDYVAVATSQGLVV 100
gnomAD_SAV:     P EL L G C N  G   YP   F  RQ  F H   M V   #   S C    R  F REQCL Y    PD#K  V   T   R      I IG DV  
Conservation:  7232423451333584544264755545646535569564234545646565585666666546465438444453522554623445566446446354
SS_PSIPRED:                EEEEE    HHHHHH       EEEEEEE    EEEEEE   EEEEEE    EEEEEE      EEEEEEE     EEEEEE   EEE
SS_SPIDER3:                EEEEE   HHHHHH        EEEEEEEEE  EEEEEE    EEEEE    EEEEEE      EEEEEEEE    EEEEEE    EE
SS_PSSPRED:                HHHHH   HHHHHHHH      EEEEEEE    EEEEEE   EEEEEE   HHHHHHH      EEEEEEE     EEEEEE   EEE
DO_DISOPRED3:  DDDDDDDD                                                                                            
DO_SPOTD:      DDDD                                                                                                
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            VWELNQERRGKPEQMYVSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITTVDSCVVQLDYLDGRLLISSLTRSFLC 200
BenignSAV:                   I                                                                                     
gnomAD_SAV:           LC  L *IH  P YNDQG  G  * A V II L  D   F V   #AY RVEVS    I L EAM  #G SI H #C# AK       QC F 
Conservation:  6669444446485444494686821686549943365574682397662663344843844447769766374645625568542766646796655665
SS_PSIPRED:    EEE         EEEEEE      EEEEEEE     EEEEEE   EEEEEEEE        EEEEE   EEEE     EEEEE    EEEEEEEEEEEEE
SS_SPIDER3:    EEE         EEEEE       EEEEEEEE    EEEEEE    EEEEEE        EEEEEEEE E E     EEEEEE    EEEEE   EEEEE
SS_PSSPRED:    EEEE         EEEE        EEEEEE     EEEEEE   EEEEEE   HHHHHHHHHHE    EEEE     EEEEE    EEEEE      EE
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:               DDDDD                                                                                   

                       10        20        30        40        50        60        70        80        90     
AA:            DTEREKFWKIGNKERDGEYGACFFPGRCSGGQQPLIYCARPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPKLLHLSE 300
PathogenicSAV:                                        P                                                            
gnomAD_SAV:     AD D     E    # KH  F L   Y V   L  #  HS CGL K    E AV     R F LSLS       L LR  N T C  T*  L   #RG 
Conservation:  8556578866957695957969844241121434866889998959975629793998988469425649674151763620112226652936982444
SS_PSIPRED:    E    EEEE         EEEEEE          EEEEE    EEEEE    EEEEEEEHHHHH      EEE                    EEEEE  
SS_SPIDER3:    E    EEEEEE  E    EEEEEE          EEEEE   EEEEEE     EEEEEEEEHE       EEE                   EEEEEE  
SS_PSSPRED:                       EEEE           EEEEE     EEEEE    EEEHHHHHHHH       E                     EEEEE  
DO_DISOPRED3:                                                                         DDDDDDDDDDDDDDDDDD           
DO_SPOTD:                                                                                      DDD                 
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            HCVLTWTERGIYIFIPQNVQVLLWSEVKDIQDVAVCRNELFCLHLNGKVSHLSLISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEH 400
BenignSAV:                                                  S                                                      
gnomAD_SAV:     Y   G   AMCV      R   RGK  G  H VL  HDF   RPSE       VPA H   C  S R  IF  CI S   S #   #  EA IE     
Conservation:  4344585333645438543577694544561654636477599504945375374547885789566429157714536855363256469156377974
SS_PSIPRED:     EEEEE   EEEEEE    EEEEE      EEEEEE  EEEEEEE  EEEEEEEE HHHHHHHHHH   HHHHHHHHHHHHHHHHHHHHHH   HHHHHH
SS_SPIDER3:     EEEEE   EEEEE    EEEEEEE    EEEEEEE  EEEEEEE  EEEEEEEEEHHHHHHHHHH   HHHHHHHHHHHHHHHHHHHH     HHHHHH
SS_PSSPRED:     EEEEEE  EEEEEE   EEEEEEE    EEEEEEE  EEEEE     EEEEEEE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH    HHHHHH
DO_DISOPRED3:                                                                                                  DDDD
DO_SPOTD:                                                                                                 D DDDDDDD
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            LKSQLDHGTYNDLISQLEELILKFEPLDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQTLSEDERFKEFTSQQEEDLPDQCCGSH 500
BenignSAV:                     M                                   C                                               
gnomAD_SAV:         ERD *#G    MK F   LK F     G S  V  LD  G M# D FC V    V  L   P  IY  I  K       I EK   QR#  SD#D
Conservation:  8738951222134314675552648935987899999699866677766779776247659697675497266434766547751325754214322222
SS_PSIPRED:    HHHHH    HHHHHHHHHHHHHHH                         EEEEEE                     HHHHH       EE          
SS_SPIDER3:    HHHHH     HHHHHHHHHHHH                       E    EEE E                     HHHH                    
SS_PSSPRED:    HHHHH     HHHHHHHHHHHHHH                           EE                        HHH                    
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:       DDDDDDDDDDDDDDD        DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:                                                                    DDDDD        DDDDDDDD     DDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            GNEDNVSHAPVMFETDKNETFLPFGIPLPFRSPSPLVSLQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDTEEEKEV 600
BenignSAV:     R                                                                                                   
gnomAD_SAV:    RS#GSAFRGA I  I E     LLS   LLH     LP    IQGLCR  GE    VV PRRRSG  A SQ  SNGP #  VL LY   T GGPDKGT  
Conservation:  2226112223121514526224695544685334554565456557769779866575666244614143613323122621212111343121422122
SS_PSIPRED:                                                  HH                                                    
SS_SPIDER3:                                         H       HHHH    HHHH                                           
SS_PSSPRED:                                                                                                        
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDD   D      DD         D                  DD D  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
MODRES_P:                                     S S                                                                  

                       10        20        30        40        50        60        70        80        90     
AA:            TSPPPEEDRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMKDFSGVSDTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEE 700
PathogenicSAV:                        R                                                                            
BenignSAV:                                      K                                                                  
gnomAD_SAV:     N T#  N LRKI    V V    R H   C  K      R     S T  GL* S V       FVE    M     LERE  H   GQ  M P     
Conservation:  0011224204248215923531355782587560162139228421953263121011001000000011110010031000111100222001010011
SS_PSIPRED:          HHHHHHHHHHHHHHHHHH  HHHH   HHHHHHHHHHHHHHHHHH                       HHHHHH                    
SS_SPIDER3:           HHHHHHHHHHHHHHHHH  H HE  HHHHHHHHHHHHHHHHHHH                        H            HHHH       E
SS_PSSPRED:           HHHHHHHHHHHHHHHHH    EEE HHHHHHHHHHHHHHHHHHH                                                 
DO_DISOPRED3:  DDDDDDDDDDDDDDDDD DDD DDD D                         DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDD                                DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDD                                     DD D   DDD   DDDDD        D  DDDDDDDDDDDDDDD  
MODRES_P:                                                                                                    S     

                       10        20        30        40        50        60        70        80        90     
AA:            SVDKTACECVRSPRESLDDLFQICSPCAIASGLRNDLAELTTLCLELNVLNSKIKSTSGHVDHTLQQYSPEILACQFLKKYFFLLNLKRAKESIKLSYSN 800
PathogenicSAV:                                        S                                                            
gnomAD_SAV:         VR R SR S   NV #RMF LRT  CDFWS  #   I  F  II    MR #    N  WR*#F K P  RLV  S  P  ## G KN Q    T
Conservation:  0001010110011123322043505611430242237246457547524511201010120200222012221321855378679544747335331411
SS_PSIPRED:                         EE         HHHHHHHHHHHHHHH                      HHHHHHHHHHHHHHH  HHHHHHHHHHH   
SS_SPIDER3:                          E       HHHHHHHHHHHHHHHH                       HHHHHHHHHHHHH    HHHHHHHHHHH   
SS_PSSPRED:         E                E     HHHHHHHHHHHHHHHHHHHH                     HHHHHHHHHHHHHHHH HHHHHHHHHHH   
DO_DISOPRED3:  DDDDDDDDDDDDDDDD                                    DDDDDDDDDDDDDD                                  
DO_SPOTD:      DDDDDDDDDDDDDDD                                       DDDDDDDDDDD                                   
DO_IUPRED2A:                                                               D                                       

                       10        20        30        40        50        60        70        80        90     
AA:            SPSVWDTFIEGLKEMASSNPVYMEMEKGDLPTRLKLLDDEVPFDSPLLVVYATRLYEKFGESALRSLIKFFPSILPSDIIQLCHHHPAEFLAYLDSLVKS 900
BenignSAV:     N                                            L                                                      
gnomAD_SAV:    NRA      G  R  V   AL IKVGE  V     V   KFS G L  A  TPW C  YR    *FF RL L  SLL  T  S PDT     C  G    
Conservation:  2406324633663526213431024314573316526242233237255554154454566244844247682528496134421142589486959547
SS_PSIPRED:     HHHHHHHHHHHHHHHH  HHHHHHH   HHHHHHHH        HHHHHHHHHHHHHHHHHHHHHHHHH     HHHHHHHHHH  HHHHHHHHHHHH 
SS_SPIDER3:       HHHHHHHHHHHHH   HHHHHHHH  HHHHHHHH        HHHHHHHHHHHHHH HHHHHHHHHH     HHHHHHHHHH HHHHHHHHHHHHH 
SS_PSSPRED:       HHHHHHHHHHHHHH  HHHHHHHH  HHHHHHHHH        HHHHHHHHHHHH HHHHHHHHHHH     HHHHHHHHHH HHHHHHHHHHHHH 
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            RPEDQRSSFLESLLQPESLRLDWLLLAVSLDAPPSTSTMDDEGYPRPHSHLLSWGYSQLILHLIKLPADFITKEKMTDICRSCGFWPGYLILCLELERRR 1000
gnomAD_SAV:     A   Q*T          SS         RV#QAG #  EV    S   YW   DHI        P    KS Q I A#YTA     #  L#S    T  
Conservation:  4464364279345738544544881685534573123435139284448945395844663474378543148256242841297928541882583381
SS_PSIPRED:      HHHHHHHHHHHH  HHHHHHHHHHHHH                  HHH     HHHHHHHHHH       HHHHHHHHHHH   HHHHHHHHHHHHHH
SS_SPIDER3:      HHH  HHHHHHH  HHHHHHHHHHHH          E     E    EEEE  HHHHHHHHHH    HH HHHHHHHHHH   HHHHHHHHHHHHHHH
SS_PSSPRED:       HHHHHHHHHHH  HHHHHHHHHHHHH                          HHHHHHHHHH    HHHHHHHHHHHHHH   HHHHHHHHHHHHHH
DO_DISOPRED3:                                   DDDDDDDDDD                                                         
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                       DDDDDDD                                                         

                       10        20        30        40        50        60        70        80        90     
AA:            EAFTNIVYLNDMSLMEGDNGWIPETVEEWKLLLHLIQSKSTRPAPQESLNGSLSDGPSPINVENVALLLAKAMGPDRAWSLLQECGLALELSEKFTRTCD 1100
BenignSAV:                   I                                                         V   W                       
gnomAD_SAV:     G  DT     T QIK   D  L#PM  RNI F   RGQRMT  SKV*  R FT    #  M         TL  #W     *KYV V G   Q   I N
Conservation:  6384244175943843311613734348944573733112001110101331112222144364447365522875252136463521013523510464
SS_PSIPRED:    HHHHHHHHH  HHH           HHHHHHHHHHHHH                       HHHHHHHHHHHH HHHHHHHHHH    HHH HHHHHHHH
SS_SPIDER3:    HHHHHHHH   HHH           HHHHHHHHHHHHH                       HHHHHHHHHHHH HHHHHHHHHH        HHHHHHHH
SS_PSSPRED:    HHHHHHHHH                HHHHHHHHHHHHHH                      HHHHHHHHHHHH  HHHHHHHHHHHHHHHHHHHHHHHHH
DO_DISOPRED3:                                         DDDDDDDDDDDDDD                                               
DO_SPOTD:                                                 DDDDD DDDDD                                              
DO_IUPRED2A:                                                DDDDDDDDD                                              

                       10        20        3
AA:            ILRIAEKRQRALIQSMLEKCDRFLWSQQA 1129
gnomAD_SAV:     M   K  *K   #       #       
Conservation:  45655669884243234535436544322
SS_PSIPRED:    HHHHHHHHHHHHHHHHHHHHHHHHHH   
SS_SPIDER3:    HHHHHHHHHHHHHHHHHHHHH H      
SS_PSSPRED:    HHHHHHHHHHHHHHHHHHHHHHHHHH   
DO_DISOPRED3:                               
DO_SPOTD:                                  D
DO_IUPRED2A: