Q9Y5F3  PCDB1_HUMAN

Gene name: PCDHB1   Description: Protocadherin beta-1

Length: 818    GTS: 2.431e-06   GTS percentile: 0.789     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


      BenignSAV: 7      gnomAD_SAV: 390      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MAGTRRKSLQNRQVGSLLIFLCISVGDATTIRYSVAEEMESGSFVANVAKDLGLEVGKLAARGARLVSEGNKMHFRLHRKTGDLFVKEKLDRESLCGKAD 100
gnomAD_SAV:    IGDKG TF    * ET  #S  #   H   T S   D ID RLS    #EN    A    TSA     KAYRKR W  S R   I NQ VAQ*    N Y
Conservation:  9401045024295521744444251542355999999999759997999777755474942755777555553797775799997797779993799939
STMI:          SSSSSSSSSSSSSSSSSSSSSSSSSSSS                                                                        
SS_PSIPRED:        HHH HHHHHHHHHHHHHHHHHH        HHHH    EEHHHHHHH    HHHHHH   EEEE   EEEEEE     EEEE     HHHH     
SS_SPIDER3:         H  HHHHHHHHHHHHH HHH      EEE HHH H   HHHHHHHHH   HHHHHH   EEEEE  EEEEEE      EEE  E  HHHHH    
SS_PSSPRED:              HHHHHHHHHHHHHH           HHH     EHHHHHHHH   HHHHHHH  EEEE     EEEEE     EEE     HHHH     
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDD                                                                         
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDD D                                                                             
DO_IUPRED2A:   DDD  D                                                                                              

                       10        20        30        40        50        60        70        80        90     
AA:            PCVLHFEVVLVEPLQSFRAEVRVFDINDNAPVFLNKEPLLKIPESTPLGSRFPLQSAQDLDVGLNGLQNYTLSANGYFHLHTRFCSHGPKYAELVLNKPL 200
gnomAD_SAV:    S   Y       S   S#   K  YVS  #      D  S  SQ  #  A LA  RV  M      F   I N SV S PYN   T    N        P
Conservation:  9997197779379997746799999979579493521559779999979979999795957777979999797270595999794757999997993499
SS_PSIPRED:      EEEEEEEEE   EEEEEEEEEE              EEE         EEE               EEEE     EEEEEEE     EEEEEEE    
SS_SPIDER3:      EEEEEEEEE   EEEEEEEEEEE             EEEE        EEE               EEE      EEEEEEE     EEE EE     
SS_PSSPRED:      EEEEEEEEE  EEEEEEEEEEEE             EEE                           EEEE     EEEEE        HHHHH     
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                  DDDD 
CARBOHYD:                                                                          N                               

                       10        20        30        40        50        60        70        80        90     
AA:            DREEQPEVNLTITAVDGGSPPKSGTAHIHVVVLDVNDHVPQFSRLVYRAQVSENSPNGSLVATVTAVDLDEGTNKAITYSLAQNPEAILKTFQIDPQNGE 300
gnomAD_SAV:       G*R     MM   SR R         L IME SN  AH LQ M   H# KS LS  S V     NPE* N Q #            RM  T   SAD
Conservation:  9991553757957959977979573539251597799479797777955554949217749419593959473953539974594436357935441594
SS_PSIPRED:          EEEEEEEEE        EEEEEEEEEE            EEEEEEE       EEEEEEEE       EEEEEEEE   HHHHH EEE     E
SS_SPIDER3:          EEEEEEEEEE     EEEEEEEEEEEEE       E E EEEEEE        EEEEEEE        EEEEEEEE   HHHH  EEE     E
SS_PSSPRED:           EEEEEEEE         EEEEEEEEEE           EEEEEEE       EEEEEEE        EEEEEEE    HHHHH EE      E
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:         DDDDDDDDDDD D                                      D   DDDDD                         D        
CARBOHYD:              N                                               N                                           

                       10        20        30        40        50        60        70        80        90     
AA:            VRLRGPLDFEAIETYDIDIQATDGGGLSAHSKVLVEVVDVNDNPPEVMVSSVSSPLPEDSPPQTVVALFTIRDRDIRVGGKVTCFLREDLPFVIKPTFGN 400
BenignSAV:                                                                                         L    F          
gnomAD_SAV:     Q T LFNSK   AHN H  TIN# DF    EI   M V       M        #A  LRS I AS S T  W  #       L K VFA       R 
Conservation:  6473537979127799596977959997599799777477797795757497355579973449797995599493749575397434519916729747
SS_PSIPRED:    EEE         EEEEEEEEEE      EEEEEEEEEEE      EEEEEEE            EEEEEEEE        EEEEE      EEEEE    
SS_SPIDER3:    EEEEEE       EEEEEEEEEE     EEEEEEEEEEE      EEEEEE            EEEEEEEE         EEEEEE     EEEEE    
SS_PSSPRED:    EEE       EEEEEEEEEEEE       EEEEEEEEEE       EEEEE            EEEEEEEEE        EEEEE        E      
DO_DISOPRED3:                                             DDDDDD DDD                                               
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                               D DDDDDDDDDDDD D    D                                   

                       10        20        30        40        50        60        70        80        90     
AA:            SYSLVTDRSLDREEVSGYNITIVAMDTGPPSLSAETMIEVLISDVNDNPPIFREDSYILTVRENNSPAVFIGKVHAEDLDLGENAQITYSLLPPKNGDLS 500
gnomAD_SAV:       VI   T GWKK  DH     P V    #SPVQ  #  I YNII     CQ   C  PA*    T L TS   T  V        # Y   LEKR  *
Conservation:  5959573407779155599595773957491975993779577979994919272494777799999957757929294945497463957999379997
SS_PSIPRED:     EEEE             EEEEEEE       EEEEEEEEEEE            EEEEEEE       EEEEEEEE        EEEEEE         
SS_SPIDER3:    EEEEEE             EEEEEEE        EEEEEEEEE            EEEEEEE      EEEEEEEEE      EEEEEEEE         
SS_PSSPRED:    EEEE               EEEEEE          EEEEEEEEE            EEEEEEE       EEEEEEE       EEEEEE          
DO_DISOPRED3:                                                DDD                                                   
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       
CARBOHYD:                        N                                                                                 

                       10        20        30        40        50        60        70        80        90     
AA:            VFAYISINSGNGKLYALRTMDYEAIQDFQFVVKATDGGFLSLSSQVTVRVVVLDDNDNRPMILYPLQNGTLPCNDLVPRSAEAGYLVTKVVAVDGDSGQN 600
BenignSAV:                            V                                                                            
gnomAD_SAV:    LLVCV    D  *P V TAR   VT    SL  TS  V        A K    E SE H    #AP    FL  E GR Y  V   M    VMG G S  
Conservation:  9959797974999999995597999519795777477934497475497777794999497799979977555799597497557999999997499749
SS_PSIPRED:     EEEEEEE     EEEEE   HHHHEEEEEEEEEE         EEEEEEEEE       EEE                       EEEEEEEE    HH
SS_SPIDER3:      EEEEEE     EEEEE   HHHHHEEEEEEEEEE        EEEEEEEEE       EEEE        H  E         EEEEEEEEE     H
SS_PSSPRED:     EEEEEEE    HHHHHHHH HHHHHHHEEEEEEE        EEEEEEEEEEE                               EEEEEEEEE     H
DO_DISOPRED3:                                        DD                                                            
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       
CARBOHYD:                                                                         N                                

                       10        20        30        40        50        60        70        80        90     
AA:            SWLSYHLLKATDLGLFSVQRQNGEIHTLRQISERDPMMQKLIILVQDHGQPALSTTVSLNILLVDGFSEPYLQFQDPTKHSRKVNPSTKYLVISLVILSF 700
BenignSAV:               I                                                                                         
gnomAD_SAV:     *  CRVPN   R    IR * E       VP S    K  V F *  #     S D  HV        HF  S        N  T  N  L  P T   
Conservation:  9997929799791597575477999775727599943477537475999793959957975999499959777523222221177559799797944975
STMI:                                                                                                     MMMMMMMMM
SS_PSIPRED:    HHHHHHH         EEE                    EEEEEEEE       EEEEEEEEEE                     HHHHHHHHHHHHHHH
SS_SPIDER3:    HHHHHHHH       EE E     EEEE E         EEEEEEEE  E    EEEEEEEEEE                     HHHHHHHHHHHHHHH
SS_PSSPRED:    HHHHHHHHH       EEEE    HHHHH HH       EEEEEEEE        EEEEEEEEE                       HHHHHHHHHHHHH
DO_DISOPRED3:                                                                                 D D                 D
DO_SPOTD:                                                                                    DD                    
DO_IUPRED2A:                                                                                DD                     

                       10        20        30        40        50        60        70        80        90     
AA:            LFLLSVIVIFIIHVYQKIKYREKFTIQEHFYDDCNFSNNLVQGQGNGSLSRPCPYEMCSATGTGNSEFRFLKRFMPNFPFPHATGEIKMEAGSSLPPNSD 800
BenignSAV:                T      I                                                          L                      
gnomAD_SAV:           A # TRA    IC# NLR           F   L  L D  F#WL#L# T     A    VHS TH  S L  SY I  TNIQGV N#S Y N
Conservation:  3995494395337475977373447447557599597443432310453254337725755975497737995799599373214407051021452231
STMI:          MMMMMMMMMMMM                                                                                        
SS_PSIPRED:    HHHHHHHHHHHHHHHHHHHHHH                                  EEE        EEE                              
SS_SPIDER3:    HHHHHHHHHHHHHH H     HH                         E   EEEEEEE        EE   E             E             
SS_PSSPRED:    HHHHHHHHHHHHHHHE   HHHHHH                                          EEE                              
DO_DISOPRED3:  D   DDD               DDDDDD   D                                          DDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:                                                                      DDD             DDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:                                                                                             DDDDDDDDDD

                       10        
AA:            RNKSQRLEGHDQVSDDYM 818
gnomAD_SAV:     S#         I A  T
Conservation:  333425322103124354
SS_PSIPRED:                  HH  
SS_SPIDER3:                      
SS_PSSPRED:                      
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDD D