Q9Y5G3  PCDGD_HUMAN

Gene name: PCDHGB1   Description: Protocadherin gamma-B1

Length: 927    GTS: 1.982e-06   GTS percentile: 0.647     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


            gnomAD_SAV: 568      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MQRAREAEMMKSQVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELPTRKLRVSAEDYFNVSLESGDLLVNGRIDREKICGRKLECA 100
gnomAD_SAV:    IRK    K   T LP        *RV   #MPHKS   V    GL     Y    FWQS S  P  NV H  #           S     Q  E   K  
Conservation:  0000000000000200010111100010233162418611143155344255231101300423241311450431139161412258980493111082
STMI:          SSSSSSSSSSSSSSSSSSSSSSSSSSSS                                                                        
SS_PSIPRED:      HHHHHHHHHHHHHHHHHHHHHHHHHHH      HHH       HHHHHH    HHHHH   EEEEEE  EEE     EEEE     HHHHH     EE
SS_SPIDER3:        HHHHHHHHHHHHHHHHHHHHHH H  EEEE  H      EHHHHHHH    HHHHHH   EEEE EEEEEE     EEEE    HHHHH      E
SS_PSSPRED:       HHHHH HHHHHHHHHHHHHHHHHHHHH             EEHHHHHHH   HHH     EEEEEE EEEEE     EEE     HHHHH      E
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDD      D                                                                  
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDD DD                                                                             
DO_IUPRED2A:    DD                                                                                                 
CARBOHYD:                                              N                               N                           

                       10        20        30        40        50        60        70        80        90     
AA:            LEFETVAENPMNVFHVVVVIQDINDNAPRFVAKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTKESPDGSKYPVLLLEKPLDRE 200
gnomAD_SAV:    VQ G FPKH VSA QL L T  V##S LPLAT          SS#E  #    V ET M     T C   LY  Y V K AG   I  LI     LP   
Conservation:  3134323328423214151619489628090000104141912124224161091929331734208062141261501101032111446462217869
SS_PSIPRED:    EEEEEEEE   EEEEEEEEEE             EEEEEE       EE                EEEE     EEEEEEE     EEEEEEE       
SS_SPIDER3:    EEEEEEEE     EEEEEEEE       EE   EEEEEEEEE     EEE              E EE      EEEEEEE     EEEEEEE       
SS_PSSPRED:    EEEEEEEE    EEEEEEEEEEE           EEEEEE       EEE                 E       EEEE            E      HH
DO_DISOPRED3:                                                          D D                                         
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                  D                    

                       10        20        30        40        50        60        70        80        90     
AA:            HQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYRVSLQENVPWGTSVLRVMATDQDEGINAEITYAFLNSPISTSLFNLNPNTGDITTN 300
gnomAD_SAV:    L R RL    TINS GLT# S  R #NQ   TTNDVSM IRK HG TF GHAL*  CM QM#S A  G T V   H L SP#VG  I  HS#SI  S I 
Conservation:  1110316173619481313453215051729299719181111323040732102214304182809251652407161121101007053103914131
SS_PSIPRED:       EEEEEEEEEE       EEEEEEEEEE            EEEEEEE       EEEEEEEE       EEEEEEEE     EE EEE     EEEE 
SS_SPIDER3:      EEEEEEEEEEE     EEEEEEEEEEEE            EEEEEEE       EEEEEE       E EEEEEEEE    EEEEEEE     EEEE 
SS_PSSPRED:    HHHHHHHHHHHHH        EEEEEEEEEE           EEEEEEEE      EEEEEEEE       EEEEEEE         EE       EEE 
DO_DISOPRED3:                                          D                                                           
DO_SPOTD:                                                                                                          
DO_IUPRED2A:      D DDDDDDDDD                                            D                              DDD D   DDD
CARBOHYD:                                                                                                         N

                       10        20        30        40        50        60        70        80        90     
AA:            GTLDFEETSRYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGTVIALIKVRDKDSGQNGMVTCYTQEEVPFKLESTSKNYYKL 400
gnomAD_SAV:     IM  G#S   AF M     #   V RS  #   EG   #R  I IT C     H   EI TD  E QG   AR V L #C P KFR T    #N CDEP
Conservation:  2048581110514051629161313250515161917861935141402104284411342664523181833044240404000128151122112625
SS_PSIPRED:            EEEEEEEEEE      EEEEEEEEEE       EEEEEE             EEEEEEEE        EEEEE      EEEEE     EEE
SS_SPIDER3:    EE      EEEEEEEEEEE     EEEEEEEEEE        EEEEE   E         EEEEEEE      H    EEEE     EEEEE    EEEE
SS_PSSPRED:             EEEEEEEEEE   EEEEEEEEEEEEE       EEEEE             EEEEEEE          EEEEE      EEEE     EEE
DO_DISOPRED3:                                       DDDDDDDDDDDD                                                   
DO_SPOTD:                                                                                                          
DO_IUPRED2A:   DD                                         DDDD                            DDDD                     

                       10        20        30        40        50        60        70        80        90     
AA:            VIAGALNREQTADYNVTIIATDKGKPALSSRTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPNGRVSYSILASDLEPRELLSY 500
gnomAD_SAV:     LS    WK KG  KI FT IN   LV C#S#C#  R# YVSH  L  Y  PD  Y CK#  T      GR#P #Y  LS KDF C V    K WDP  H
Conservation:  3411057690020515251518191524110104040529599617090200313141981134124115060919020640526241110101002244
SS_PSIPRED:    EE             EEEEEEE       EEEEEEEEEE            EEEEEEE       EEEEEEEE        EEEEEEE         EEE
SS_SPIDER3:    EE             EEEEEEE  E     EEEEEEEEE             EEEEE        EEEEEEEE       EEEEEEEEE     EE EEE
SS_PSSPRED:    E              EEEEEE          EEEEEEEEE           EEEEEEE        EEEEEE         EEEEEEE          EE
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                   D                                               DDDDDDDDDD                          
CARBOHYD:                    N                                                                                     

                       10        20        30        40        50        60        70        80        90     
AA:            VSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWL 600
gnomAD_SAV:    GPL TH #M LT*#V  Q   HS # IP* KA*S AVFGT M# HM G H S         V WL#  S   V  STSD S*V   L VLG# * QK R 
Conservation:  3453213715332235656213051405151818231313432415261918661805337101011120121430340122333753638065639667
SS_PSIPRED:    EEE      EEEEE   HHHEEEEEEEEEEE         EEEEEEEEE       EEE                       EEEEEEEEE    HHHHH
SS_SPIDER3:    EEEE     EEEEE       EEEEEEEEEEE        EEEEEEEEE       EEE           HHE         EEEEEEEEE      EHH
SS_PSSPRED:    EEEE     EEE    HHHHHHHHHHHHEEE         EEEEEEEEE                                 EEEEEEEEE     HHHH
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                             D                                                                         
CARBOHYD:                                              N                                                           

                       10        20        30        40        50        60        70        80        90     
AA:            SYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLSDRPEPSDPQTELQFYLVVALALISVLFL 700
gnomAD_SAV:    YC LPKTRQSRIV  V   D  LR    DY H  H C   S #HR  AS  VA K    LVH  #Q  S  GESRGL  SK G     A  FV       
Conservation:  2624022121113042023855231203040400031423242436151264432404131311011111101000010000133359544642532443
STMI:                                                                                                 MMMMMMMMMMMMM
SS_PSIPRED:    HHEEE        EE          HHH  HH    EEEEEEEE      EEEEEEEEEEE  HHHH                HHHHHHHHHHHHHHHHH
SS_SPIDER3:    HHHHHH      EEE      EEEEEE         EEEEEEEE  E   EEEEEEEEEEE  HHHH                HHHHHHHHHHHHHHHHH
SS_PSSPRED:    HHHHHE       EE     HHHHHHHH  HHHHHHEEEEEEEE      HHHHHHHHHHHHHHHHH               HHHHHHHHHHHHHHHHHH
DO_DISOPRED3:                                                    D                 D  DDDDD                        
DO_SPOTD:                                                                                 D                        
DO_IUPRED2A:                                                                        DDDDDDD                        

                       10        20        30        40        50        60        70        80        90     
AA:            LAVILAIALRLRRSSSLDTEGCFQTGLCSKSGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDDPSMVVCASNEDHKIAYDPSL 800
gnomAD_SAV:     # N G S P  #P R Y  V    A W  P  RF HS   R F C  #VRF P    A  S PSR LKI  L    S ELFI   VRHKN#R T  LCS
Conservation:  2332232204320100000000000000000100112012111112141222220210022131100000010001000000000000000000000000
STMI:          MMMMMMMM                                                                                            
SS_PSIPRED:    HHHHHHHHHHHHH                                 EEEEEEE                   HHH       HH                
SS_SPIDER3:    HHHHHHHHHHHHH       H                        E EEEEE                    HHH                         
SS_PSSPRED:    HHHHHHHHHHHHH                                  EEEEE                                                
DO_DISOPRED3:                                                         D  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:                                                               DDDD DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:                              D    DDDDDDDD                      DDDDD    DD                      DDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            SSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLT 900
gnomAD_SAV:     LQK L  M  H   T  SSIRR R  N IS  S# P      H    V T  P   GF   AA D V   TH R  S RHYMLH C     LD S    
Conservation:  0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
SS_PSIPRED:                  HHH                      HHHHHHHHHHHHHHHHH                                 EEE        
SS_SPIDER3:                  HH                       HHHHHHHHHHHHHHHH                                  EE      EE 
SS_PSSPRED:                                           HHHHHHHHHHHHHHHHH                                 EEE        
DO_DISOPRED3:  DDD      D      DDDDDDDDDDDD                             DD                                      DDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD    DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                       DDD  
DO_IUPRED2A:   DD  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD    DDDD DD  DDDDDDDDDDDDDDDDD DDDDDDDDDDD DDDDDDDDDDDDDDDDDD

                       10        20       
AA:            NAAGKRDGKAPAGGNGNKKKSGKKEKK 927
gnomAD_SAV:     TV  Q A   E   S    L     *
Conservation:  000000000000000000000000000
SS_PSIPRED:                               
SS_SPIDER3:                               
SS_PSSPRED:                               
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDD