Q9Y5I3  PCDA1_HUMAN

Gene name: PCDHA1   Description: Protocadherin alpha-1

Length: 950    GTS: 2.226e-06   GTS percentile: 0.731     


gnomAD     SWISS-MODEL     InterPro     ProViz     PDB    


      BenignSAV: 4      gnomAD_SAV: 618      SnvSAV


                       10        20        30        40        50        60        70        80        90     
AA:            MVFSRRGGLGARDLLLWLLLLAAWEVGSGQLHYSIPEEAKHGTFVGRVAQDLGLELAELVPRLFRVASKTHRDLLEVNLQNGILFVNSRIDREELCQWSA 100
gnomAD_SAV:    #MLC #WD   Q#P  CR      VMENA IRC# LQ VE#RN A HASR  R QP D A    W#E R# S#F   D  DDF  MS G E *D YH RV
Conservation:  2100010101010232221322132133245384628744464487444386452424723336443342225593562645477955447463583332
STMI:          SSSSSSSSSSSSSSSSSSSSSSSSSSSSS                                                                       
SS_PSIPRED:             HHHHHHHHHHHHHHHHHHH       HHHH   EE  HHHHHH   HHHHH  EEEEE       EEEE    EEEE     HHHHH    
SS_SPIDER3:                HHHHHHHHHHHHHHHH  EEEEE HH     EE  HHHH    HHHH    EEEE      EEEEE    EEEE  E  HHHH     
SS_PSSPRED:              HHHHHHHHHHHHHHHH         HHH     EE HHHHHH   HHHHHHH EEEE       EEEE    EEEE    HHHHHH    
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDD                                                                             
DO_SPOTD:      DDDDDDDDDD                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            ECSIHLELIADRPLQVFHVEVKVKDINDNPPVFRGREQIIFIPESRLLNSRFPIEGAADADIGANALLTYTLSPSDYFSLDVEASDELSKSLWLELRKYL 200
gnomAD_SAV:    QGN#N KV VN   RA P V  AT    DTR L#D  #  #V G G    L SV   T#     DG P  M RLGG LF#   T NK NQ F F S I V
Conservation:  3654476544445557575473637675538272111413042533233516566682828451852637262134481522112111111517253617
SS_PSIPRED:     EEEEEEEEE    EEEEEEEEEE            EEEEEEE                    HHH  EEE      EEEEE       EEHHEEE    
SS_SPIDER3:      EEEEEEEE     EEEEEEEEE           EEEEEEEE       EEE           H  EEEE      EEEEEE      E EEEEEEE  
SS_PSSPRED:     EEEEEEEEE    EEEEEEEEEEE            EEEEEE                    HHHHH          EEE         HHHHHHH   
DO_DISOPRED3:                             D                                                                D   D   
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       

                       10        20        30        40        50        60        70        80        90     
AA:            DREETPELHLLLTATDGGKPELQGTVELLITVLDVNDNAPLFDQAVYRVHLLETTANGTLVTTLNASDADEGVNGEVVFSFDSGISRDIQEKFKVDSSSG 300
gnomAD_SAV:    G GQI   Q    #P  D Q R D   V T I N  #   M   DI SGR  K I   I # I#H  EV KS     I    GC  L    EI   C  R
Conservation:  5872223305362629375755354315170757467635172322516151753112523314477618351932516251112211210170531029
SS_PSIPRED:          EEEEEEEEE       EEEEEEEEEEE            EEEEEEE       EEEEEE         EEEEEEE     HHHHHHEEE     
SS_SPIDER3:          EEEEEEEEE   E   EEEEEEEEEEEE           EEEEEE        EEEEEE         EEEEEEE     HHHHHHEEE     
SS_PSSPRED:       HHHHHHHHHHEE         EEEEEEEEEE          EEEEEEEE      EEEEEEE          EEEEE      HHHHHH        
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:             D D                                                 DD D                                  
CARBOHYD:                                                              N       N                                   

                       10        20        30        40        50        60        70        80        90     
AA:            EIRLIDKLDYEETKSYEIQVKAVDKGSPPMSNHCKVLVKVLDVNDNAPELAVTSLYLPIREDAPLSTVIALITVSDRDSGANGQVTCSLMPHVPFKLVST 400
BenignSAV:                                                                G                                        
gnomAD_SAV:    K   #   H     FHG  I T#  E #LV S Y D  EL VIS      VA       G ES  G IMP L L  C PA S## IYC I  FLC   YA
Conservation:  2514130585911225451625183614352476352545381785272413232324527552144554453427172423534361513114635225
SS_PSIPRED:    EEEEE         EEEEEEEEE        EEEEEEEEEE       EEEEEE             EEEEEEEE        EEEEEE     EEEEE 
SS_SPIDER3:     EEEEEE       EEEEEEEEEE      E EEEEEEEEEE       EEEEE             EEEEEEE E        EEEEE     EEEEE 
SS_PSSPRED:     EEE           EEEEEEEEE        EEEEEEEEEEE      EEEEE            EEEEEEE EE       EEEEE       EEEE 
DO_DISOPRED3:                                                DDDDDDDDDDD                                           
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                       D                                                                               

                       10        20        30        40        50        60        70        80        90     
AA:            FKNYYSLVLDSALDRESLSVYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSARDADAQENALVSYSLVERRVG 500
BenignSAV:                                                     H                                                   
gnomAD_SAV:     R   *# S CT   K VL  D   I W RSLSP * KDSAF    ELH   SV T# K   LL  K SSAF V A# PLVV PRK     C    PQLS
Conservation:  5444334342315435122150314242425242412131224242545442524133231333244323422332427172513244152324432113
SS_PSIPRED:       EEEEE           EEEEEEEEEE       EEEEEEEEEE            EEEEEEE       EEEEEEEE        EEEEEEE     
SS_SPIDER3:       EEEEEE          EEEEEEEEEE        EEEEEEEEE            EEEEEE       EEEEEEEE        EEEEEEEEE    
SS_PSSPRED:       EEEEE             EEEEEEE         EEEEEEEEEE           EEEEEEE       EEEEEE     H H   EEEEEE     
DO_DISOPRED3:                                                   DDDD                                               
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                              DD                       

                       10        20        30        40        50        60        70        80        90     
AA:            ERALSNYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTIGAVSELVPRLVGAGHVVAKVRAVDAD 600
gnomAD_SAV:    Q T  K EPA   NA M#VP  P  D V # RLL   ##   RSVDNKL#    APE#   #  Q V LLV #V T G   L*F#  S  LG*M# L  N
Conservation:  2113221112211122211221553622121141414143312352332331314342433151611111121101011120222124323223221423
SS_PSIPRED:     EE  EEEEEE     EEE     HHHHEEEEEEEEEEE        EEEEEEEEE       EE           EEEEEE      EEEEEEEEEE  
SS_SPIDER3:     EE EEEEEEE     EEEE    HHHHH  EEEEEEEE        EEEEEEEEEE      EEE          EEEE        EEEEEEEEE   
SS_PSSPRED:         EEEEEE    EEEE     HHHHHHHHHEEEEEE        EEEEEEEEEE                   EEEE        EEEEEEEEEE  
DO_DISOPRED3:                                                                                                      
DO_SPOTD:                                                                                                          
DO_IUPRED2A:                                                                                                       
CARBOHYD:                                                     N                                                    

                       10        20        30        40        50        60        70        80        90     
AA:            SGYNAWLSYELQPAAGGARIPFRVGLYTGEISTTRVLDEADLSRYRLLVLVKDHGEPALTATATVLVSLVESGQAPKASSRASVGVAGPEAALVDVNVYL 700
gnomAD_SAV:    L  S#C   K PRSG DSG L C R CM K N  SI   GEF CH F   A   ##T#  #M AMFA     S VSR P QV  D V S  G    S   
Conservation:  2325213121111012111014112213235111103211211121525241537241413232314133324212120001001001111122211112
STMI:                                                                                                           MMM
SS_PSIPRED:      HHEEEEEEEE         EEEE    EEEE     HHH    EEEEEEEE      EEEEEEEEEEE                  HHHH     HHH
SS_SPIDER3:       EEEEEEEE E      E EEE      EEEEEE  H HHH   EEEEEEE  E   EEEEEEEEEEEE                  HH    HHHHH
SS_PSSPRED:        EEEEEEEEE         EEE    EEEE            EEEEEEEE        EEEEEEEEE                         EEHHH
DO_DISOPRED3:                                                                          DDDDDDDDDDDDDDDDDD          
DO_SPOTD:                                                                                D DDDDDDDDDDDDDDDD        
DO_IUPRED2A:                                                                                  DD                   

                       10        20        30        40        50        60        70        80        90     
AA:            IIAICAVSSLLVLTLLLYTALRCSVPPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSLNTSERNEQPEANLDLSGNPR 800
BenignSAV:                                    C                          F                                         
gnomAD_SAV:     V   TGCR  L       VP#W# R AQ VC RS  S M PGE VR#    R#Q  #FF DD   AN  T TS P   FDKA       E  #F   RQ
Conservation:  1311224321232112222222112120110111113112221112122021112121121211131231111111101100000111111111111111
STMI:          MMMMMMMMMMMMMMMMMM                                                                                  
SS_PSIPRED:    HHHHHHHHHHHHHHHHHHHHHHH               EEEE           EEEEEE        EEEEE                            
SS_SPIDER3:    HHHHHHHHHHHHHHHHHHHHHHH               EEE            EEEEEEE      EEEEEE                            
SS_PSSPRED:    HHHHHHHHHHHHHHHHHHHHHHH                EE          HHH              EEE                             
DO_DISOPRED3:                                                   D DDDDD                   DDDDDDDDDDDDDDDDDDDDDDD  
DO_SPOTD:                                                                                      DDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:                                                        DDDDDDDDDDDDD DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50        60        70        80        90     
AA:            QPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR 900
gnomAD_SAV:         #H  DFP  RVNGA P #Q D  W A  R E RCTAL N A#G  V       SV I         E D RR CSH    NI  VAV   TF  W
Conservation:  1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
SS_PSIPRED:             HHH         HHH           HHH                                                 EEE          
SS_SPIDER3:                           H   H                                     EE  E                 EEE      HE  
SS_PSSPRED:                                                                                           EE           
DO_DISOPRED3:   DDDD DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                                   DDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD                           DDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDD D    DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD

                       10        20        30        40        50
AA:            QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ 950
gnomAD_SAV:      #  G TGN  Y I S M  I#    TRR  T    N  RK M E    
Conservation:  11111111111111111111111111111111111111111111111111
SS_PSIPRED:                      HHH            HHHHHHH          
SS_SPIDER3:                 E                      HH            
SS_PSSPRED:                                      HHHHHH          
DO_DISOPRED3:  DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_SPOTD:      DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
DO_IUPRED2A:   DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD