Accession ID Name Pfam Type
PF01138 3' exoribonuclease family, domain 1 domain

This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria.

Pfam Range: 10-141 DPAM-Pfam Range: 1-142
Uniprot ID: Q6MJR9
Pfam Range: 23-152 DPAM-Pfam Range: 7-153
Uniprot ID: Q12ZB7
Pfam Range: 16-154 DPAM-Pfam Range: 3-151
Uniprot ID: A4RVY5

References

1: The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'-->5' exoribonucleases. Mitchell P, Petfalski E, Shevchenko A, Mann M, Tollervey D; Cell 1997;91:457-466. PMID:9390555