Accession ID Name Pfam Type
PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain domain

The two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation domain of the alpha subunit/Rpb3 is interrupted by an insert domain (Pfam:PF01000). Some of the alpha subunits also contain iron-sulphur binding domains (Pfam:PF00037). Rpb11 is found as a continuous domain. Members of this family include: alpha subunit from eubacteria, alpha subunits from chloroplasts, Rpb3 subunits from eukaryotes, Rpb11 subunits from eukaryotes, RpoD subunits from archaeal spp, and RpoL subunits from archaeal spp.

Pfam Range: 22-274 DPAM-Pfam Range: 45-189
Uniprot ID: F8PUU9
Pfam Range: 26-226 DPAM-Pfam Range: 51-175
Uniprot ID: S5MF87
Pfam Range: 88-358 DPAM-Pfam Range: 113-248
Uniprot ID: R9PBB7

References

1: Structure of the Escherichia coli RNA polymerase alpha subunit amino-terminal domain. Zhang G, Darst SA; Science 1998;281:262-266. PMID:9657722

2: The Escherichia coli RNA polymerase alpha subunit: structure and function. Ebright RH, Busby S; Curr Opin Genet Dev 1995;5:197-203. PMID:7613089

3: The two alpha subunits of Escherichia coli RNA polymerase are asymmetrically arranged and contact different halves of the DNA upstream element. Murakami K, Kimura M, Owens JT, Meares CF, Ishihama A; Proc Natl Acad Sci USA 1997;94:1709-1714. PMID:9050843