Accession ID Name Pfam Type
PF01798 snoRNA binding domain, fibrillarin family

This family consists of various Pre RNA processing ribonucleoproteins. The function of the aligned region is unknown however it may be a common RNA or snoRNA or Nop1p binding domain. Nop5p (Nop58p) Swiss:Q12499 from yeast is the protein component of a ribonucleoprotein required for pre-18s rRNA processing and is suggested to function with Nop1p in a snoRNA complex [1]. Nop56p Swiss:O00567 and Nop5p interact with Nop1p and are required for ribosome biogenesis [2]. Prp31p Swiss:p49704 is required for pre-mRNA splicing in S. cerevisiae [3]. Fibrillarin, or Nop, is the catalytic subunit responsible for the methyl transfer reaction of the site-specific 2'-O-methylation of ribosomal and spliceosomal RNA [4].

Pfam Range: 172-407 DPAM-Pfam Range: 283-418
Uniprot ID: F4RKK1
Pfam Range: 103-349 DPAM-Pfam Range: 224-352
Uniprot ID: G8BT55
Pfam Range: 95-324 DPAM-Pfam Range: 210-326
Uniprot ID: A7SSP9

References

1: Nop5p is a small nucleolar ribonucleoprotein component required for pre- 18 S rRNA processing in yeast. Wu P, Brockenbrough JS, Metcalfe AC, Chen S, Aris JP; J Biol Chem 1998;273:16453-16463. PMID:9632712

2: Nucleolar KKE/D repeat proteins Nop56p and Nop58p interact with Nop1p and are required for ribosome biogenesis. Gautier T, Berges T, Tollervey D, Hurt E; Mol Cell Biol 1997;17:7088-7098. PMID:9372940

3: The PRP31 gene encodes a novel protein required for pre-mRNA splicing in Saccharomyces cerevisiae. Weidenhammer EM, Singh M, Ruiz-Noriega M, Woolford JL Jr; Nucleic Acids Res. 1996;24:1164-1170. PMID:8604353

4: Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle. Xue S, Wang R, Yang F, Terns RM, Terns MP, Zhang X, Maxwell ES, Li H; Mol Cell. 2010;39:939-949. PMID:20864039