Accession ID Name Pfam Type
PF01980 tRNA-methyltransferase O family

This family includes members such as TrmO (tRNA-methyltransferase O) also known as YaeB, which contains a single-sheeted beta-barrel structure. TrmO is an AdoMet-dependent methyltransferase responsible for m6t6A formation [1]. Its human homolog, is responsible for formation of m6t6A37 in cytoplasmic tRNASer. Lack of TrmO decreases attenuation activity of the thr operon, indicating that N6 methylation of m6t6A37 ensures efficient decoding of ACY codons [2]. In bacteria and eukaryotes, TrmO has a C-terminal domain containing the conserved DPRxxY motif. Where the Asp194 and Arg196 in this motif of E. coli TrmO are necessary for N6-methylation. However, no archaeal YaeB has a C-terminal domain containing the DPRxxY motif that is conserved in bacterial and mammalian TrmO homologs [1].

Pfam Range: 34-156 DPAM-Pfam Range: 19-158
Uniprot ID: R6G9T3
Pfam Range: 18-129 DPAM-Pfam Range: 1-129
Uniprot ID: U6ECN0
Pfam Range: 20-142 DPAM-Pfam Range: 5-157
Uniprot ID: R9PSW8

References

1: Discovery of the beta-barrel-type RNA methyltransferase responsible for N6-methylation of N6-threonylcarbamoyladenosine in tRNAs. Kimura S, Miyauchi K, Ikeuchi Y, Thiaville PC, Crecy-Lagard Vd, Suzuki T; Nucleic Acids Res. 2014;42:9350-9365. PMID:25063302

2: Identification of 2-methylthio cyclic N6-threonylcarbamoyladenosine (ms2ct6A) as a novel RNA modification at position 37 of tRNAs. Kang BI, Miyauchi K, Matuszewski M, D'Almeida GS, Rubio MAT, Alfonzo JD, Inoue K, Sakaguchi Y, Suzuki T, Sochacka E, Suzuki T; Nucleic Acids Res. 2017;45:2124-2136. PMID:27913733