Accession ID Name Pfam Type
PF03368 Dicer dimerisation domain domain

This domain is found in members of the Dicer protein family which function in RNA interference, an evolutionarily conserved mechanism for gene silencing using double-stranded RNA (dsRNA) molecules. It is essential for the activity of Dicer [1,2]. It is a divergent double stranded RNA-binding domain [3]. The N-terminal alpha helix of this domain is in a different orientation to that found in canonical dsRNA-binding domains. This results in a change of charge distribution at the potential dsRNA-binding surface and in the N- and C-termini of the domain being in close proximity [4]. This domain has weak dsRNA-binding activity. It mediates heterodimerisation of Dicer proteins with their respective protein partners [4].

Pfam Range: 192-279 DPAM-Pfam Range: 173-276
Uniprot ID: F6HCK3
Pfam Range: 634-721 DPAM-Pfam Range: 617-724
Uniprot ID: Q0CW42
Pfam Range: 564-655 DPAM-Pfam Range: 539-656
Uniprot ID: Q4WA22

References

1: The role of PACT in the RNA silencing pathway. Lee Y, Hur I, Park SY, Kim YK, Suh MR, Kim VN; EMBO J. 2006;25:522-532. PMID:16424907

2: Functional anatomy of the Drosophila microRNA-generating enzyme. Ye X, Paroo Z, Liu Q; J Biol Chem. 2007;282:28373-28378. PMID:17666393

3: DUF283 domain of Dicer proteins has a double-stranded RNA-binding fold. Dlakic M; Bioinformatics. 2006;22:2711-2714. PMID:16954143

4: Structure of the Arabidopsis thaliana DCL4 DUF283 domain reveals a noncanonical double-stranded RNA-binding fold for protein-protein interaction. Qin H, Chen F, Huan X, Machida S, Song J, Yuan YA; RNA. 2010;16:474-481. PMID:20106953