Accession ID Name Pfam Type
PF03658 RnfH family Ubiquitin domain

A member of the RnfH family of the ubiquitin superfamily. Members of this family strongly co-occur in two distinct gene neighborhood contexts. In one it is associated with a START domain protein, a membrane protein SmpA and the transfer mRNA binding protein SmpB. This association suggests a possible role in the SmpB-tmRNA-based tagging and degadation system of bacteria, which is interesting given that other members of the ubiquitin system are analogously involved in protein-tagging and degradation across eukaryotes and various prokaryotes. The second context in which the RnfH genes are present is in a membrane associated complex involved in transporting electrons for various reductive reactions such as nitrogen fixation [1].

Pfam Range: 1-83 DPAM-Pfam Range: 1-83
Uniprot ID: S6AAF8
Pfam Range: 5-88 DPAM-Pfam Range: 2-89
Uniprot ID: Q5NYE2
Pfam Range: 4-88 DPAM-Pfam Range: 1-89
Uniprot ID: F2K0E2

References

1: The prokaryotic antecedents of the ubiquitin-signaling system and the early evolution of ubiquitin-like beta-grasp domains. Iyer LM, Burroughs AM, Aravind L; Genome Biol. 2006;7:R60. PMID:16859499