Accession ID Name Pfam Type
PF03725 3' exoribonuclease family, domain 2 domain

This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria.

Pfam Range: 131-208 DPAM-Pfam Range: 131-217
Uniprot ID: Q6FTE6
Pfam Range: 181-247 DPAM-Pfam Range: 184-252
Uniprot ID: A0B8W2
Pfam Range: 161-229 DPAM-Pfam Range: 162-238
Uniprot ID: A4S1T2

References

1: The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'-->5' exoribonucleases. Mitchell P, Petfalski E, Shevchenko A, Mann M, Tollervey D; Cell 1997;91:457-466. PMID:9390555