Accession ID Name Pfam Type
PF04129 Vps52/Sac2 family, coiled-coil repeat

Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex, the Golgi-associated retrograde protein (GARP) complex that is involved in retrograde transport from early and late endosomes to the trans-Golgi network, regulating membrane trafficking events [1,2,3,4]. It is also part of the EARP (Endosome-Associated Recycling Protein) complex, involved in endocytic recycling [3]. GARP complex is part of the family of evolutionarily related complexes associated with tethering containing helical rods (CATCHR), which includes the conserved oligomeric Golgi (COG), Dsl1 and exocyst complexes. They share structural features consisting of an alpha-helical bundle at the C-terminal and usually a coiled-coil (CC) region at the N-terminal [5]. This entry represents the CC region found at the N-terminal of Vps52.

Pfam Range: 49-221 DPAM-Pfam Range: 118-662
Uniprot ID: Q9VMQ8
Pfam Range: 54-239 DPAM-Pfam Range: 121-639
Uniprot ID: P39904
Pfam Range: 93-266 DPAM-Pfam Range: 186-704
Uniprot ID: Q94KD3

References

1: Characterization of the human GARP (Golgi associated retrograde protein) complex. Liewen H, Meinhold-Heerlein I, Oliveira V, Schwarzenbacher R, Luo G, Wadle A, Jung M, Pfreundschuh M, Stenner-Liewen F; Exp Cell Res. 2005;306:24-34. PMID:15878329

2: Requirement of the human GARP complex for mannose 6-phosphate-receptor-dependent sorting of cathepsin D to lysosomes. Perez-Victoria FJ, Mardones GA, Bonifacino JS; Mol Biol Cell. 2008;19:2350-2362. PMID:18367545

3: EARP is a multisubunit tethering complex involved in endocytic recycling. Schindler C, Chen Y, Pu J, Guo X, Bonifacino JS; Nat Cell Biol. 2015;17:639-650. PMID:25799061

4: Vps51p mediates the association of the GARP (Vps52/53/54) complex with the late Golgi t-SNARE Tlg1p. Conibear E, Cleck JN, Stevens TH; Mol Biol Cell. 2003;14:1610-1623. PMID:12686613

5: Homology and Modular Evolution of CATCHR at the Origin of the Eukaryotic Endomembrane System. Santana-Molina C, Gutierrez F, Devos DP; Genome Biol Evol. 2021; [Epub ahead of print] PMID:34061181