Accession ID Name Pfam Type
PF04257 Exodeoxyribonuclease V, gamma subunit family

The Exodeoxyribonuclease V enzyme is a multi-subunit enzyme comprised of the proteins RecB, RecC (this family) and RecD. This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyses ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of ssDNA or dsDNA and unwinding of dsDNA [1]. This subunit recognises and binds DNA forks containing Chi sequences in a sequence specific manner while Chi interactions with the phosphodiester backbone (mainly arginine side chains) stabilise the twisted conformation of the DNA. These interactions induce conformational changes that switch RecBCD from bacteriophage destruction and CRISPR spacer acquisition, to constructive host DNA repair [2].

Pfam Range: 9-342 DPAM-Pfam Range: 3-359
Uniprot ID: A9BRA8
Pfam Range: 2-368 DPAM-Pfam Range: 1-371
Uniprot ID: Q9CM76
Pfam Range: 10-317 DPAM-Pfam Range: 6-336
Uniprot ID: Q9PG80

References

1: The initiation and control of homologous recombination in Escherichia coli. Smith GR, Amundsen SK, Dabert P, Taylor AF; Philos Trans R Soc Lond B Biol Sci 1995;347:13-20. PMID:7746848

2: A conformational switch in response to Chi converts RecBCD from phage destruction to DNA repair. Cheng K, Wilkinson M, Chaban Y, Wigley DB; Nat Struct Mol Biol. 2020;27:71-77. PMID:31907455