Accession ID Name Pfam Type
PF04560 RNA polymerase Rpb2, domain 7 domain

RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA polymerase. This domain comprised of the structural domains anchor and clamp [1]. The clamp region (C-terminal) contains a zinc-binding motif [1]. The clamp region is named due to its interaction with the clamp domain found in Rpb1. The domain also contains a region termed "switch 4". The switches within the polymerase are thought to signal different stages of transcription [1].

Pfam Range: 1080-1156 DPAM-Pfam Range: 1056-1171
Uniprot ID: O83269
Pfam Range: 1063-1155 DPAM-Pfam Range: 1039-1155
Uniprot ID: Q9YAT8
Pfam Range: 1177-1253 DPAM-Pfam Range: 1153-1263
Uniprot ID: P29398

References

1: Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution. Cramer P, Bushnell DA, Kornberg RD; Science 2001;292:1863-1876. PMID:11313498