Accession ID Name Pfam Type
PF04983 RNA polymerase Rpb1, domain 3 domain

RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 3, represents the pore domain. The 3' end of RNA is positioned close to this domain. The pore delimited by this domain is thought to act as a channel through which nucleotides enter the active site and/or where the 3' end of the RNA may be extruded during back-tracking [1,2].

Pfam Range: 493-659 DPAM-Pfam Range: 505-649
Uniprot ID: Q9YAU1
Pfam Range: 490-673 DPAM-Pfam Range: 502-665
Uniprot ID: Q9V114
Pfam Range: 489-644 DPAM-Pfam Range: 501-635
Uniprot ID: Q9PA87

References

1: Structural modules of the large subunits of RNA polymerase. Introducing archaebacterial and chloroplast split sites in the beta and beta' subunits of Escherichia coli RNA polymerase. Severinov K, Mustaev A, Kukarin A, Muzzin O, Bass I, Darst SA, Goldfarb A; J Biol Chem 1996;271:27969-27974. PMID:8910400

2: Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution. Cramer P, Bushnell DA, Kornberg RD; Science 2001;292:1863-1876. PMID:11313498