Accession ID Name Pfam Type
PF04992 RNA polymerase Rpb1, domain 6 domain

RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 6, represents a mobile module of the RNA polymerase. Domain 6 forms part of the shelf module [1,2]. This family appears to be specific to the largest subunit of RNA polymerase II.

Pfam Range: 890-1073 DPAM-Pfam Range: 894-1074
Uniprot ID: P16356
Pfam Range: 198-383 DPAM-Pfam Range: 196-385
Uniprot ID: U5GZ63
Pfam Range: 891-1075 DPAM-Pfam Range: 891-1076
Uniprot ID: I1L748

References

1: Structural modules of the large subunits of RNA polymerase. Introducing archaebacterial and chloroplast split sites in the beta and beta' subunits of Escherichia coli RNA polymerase. Severinov K, Mustaev A, Kukarin A, Muzzin O, Bass I, Darst SA, Goldfarb A; J Biol Chem 1996;271:27969-27974. PMID:8910400

2: Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution. Cramer P, Bushnell DA, Kornberg RD; Science 2001;292:1863-1876. PMID:11313498