Accession ID Name Pfam Type
PF04997 RNA polymerase Rpb1, domain 1 domain

RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 1, represents the clamp domain, which a mobile domain involved in positioning the DNA, maintenance of the transcription bubble and positioning of the nascent RNA strand [1,2].

Pfam Range: 12-352 DPAM-Pfam Range: 22-342
Uniprot ID: Q18566
Pfam Range: 12-348 DPAM-Pfam Range: 3-336
Uniprot ID: P16356
Pfam Range: 13-346 DPAM-Pfam Range: 7-340
Uniprot ID: P36594

References

1: Structural modules of the large subunits of RNA polymerase. Introducing archaebacterial and chloroplast split sites in the beta and beta' subunits of Escherichia coli RNA polymerase. Severinov K, Mustaev A, Kukarin A, Muzzin O, Bass I, Darst SA, Goldfarb A; J Biol Chem 1996;271:27969-27974. PMID:8910400

2: Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution. Cramer P, Bushnell DA, Kornberg RD; Science 2001;292:1863-1876. PMID:11313498